Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
COL28A1Q2UY09 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 AL512306.1-201ENST00000432698 848 ntBASIC13.61□□□□□ -0.23
COL28A1Q2UY09 ERP29P1-201ENST00000442902 706 ntBASIC13.61□□□□□ -0.23
COL28A1Q2UY09 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 DUX4L50-201ENST00000455245 715 ntBASIC13.61□□□□□ -0.23
COL28A1Q2UY09 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 AC068867.1-201ENST00000559855 150 ntBASIC13.61□□□□□ -0.23
COL28A1Q2UY09 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 MED11-202ENST00000573708 802 ntTSL 2 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 CYP4F36P-201ENST00000589193 186 ntBASIC13.61□□□□□ -0.23
COL28A1Q2UY09 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 AC018629.1-201ENST00000623381 1736 ntBASIC13.61□□□□□ -0.23
COL28A1Q2UY09 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL28A1Q2UY09 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 PHB-210ENST00000511832 1509 ntTSL 2 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 AL929302.1-201ENST00000426556 871 ntBASIC13.6□□□□□ -0.23
COL28A1Q2UY09 KRT18P46-201ENST00000435568 1279 ntBASIC13.6□□□□□ -0.23
COL28A1Q2UY09 RPL3P5-201ENST00000441645 1232 ntBASIC13.6□□□□□ -0.23
COL28A1Q2UY09 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 AC006529.1-201ENST00000459978 637 ntBASIC13.6□□□□□ -0.23
COL28A1Q2UY09 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms