Protein–RNA interactions for Protein: P20036

HLA-DPA1, HLA class II histocompatibility antigen, DP alpha 1 chain, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1P20036 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 AC015909.3-201ENST00000572855 1794 ntBASIC14.24□□□□□ -0.13
HLA-DPA1P20036 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 MARK2P9-201ENST00000430958 1727 ntBASIC14.24□□□□□ -0.13
HLA-DPA1P20036 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 DEF8-202ENST00000418391 852 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 FNTAP2-201ENST00000430308 634 ntBASIC14.24□□□□□ -0.13
HLA-DPA1P20036 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 CD164-210ENST00000512821 964 ntTSL 2 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 RN7SL774P-201ENST00000577467 290 ntBASIC14.24□□□□□ -0.13
HLA-DPA1P20036 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 REXO1L1P-201ENST00000379010 6598 ntBASIC14.24□□□□□ -0.13
HLA-DPA1P20036 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HLA-DPA1P20036 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 KRT17P5-201ENST00000332088 839 ntBASIC14.23□□□□□ -0.13
HLA-DPA1P20036 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 AC022494.1-201ENST00000466044 728 ntBASIC14.23□□□□□ -0.13
HLA-DPA1P20036 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 AC005740.1-201ENST00000515639 522 ntBASIC14.23□□□□□ -0.13
HLA-DPA1P20036 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 RN7SL455P-201ENST00000580629 282 ntBASIC14.23□□□□□ -0.13
HLA-DPA1P20036 HPN-206ENST00000597419 1212 ntTSL 5 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 MEG3_2.1-201ENST00000611456 105 ntBASIC14.23□□□□□ -0.13
HLA-DPA1P20036 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 NCLP1-201ENST00000445357 1963 ntBASIC14.23□□□□□ -0.13
HLA-DPA1P20036 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DPA1P20036 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DPA1P20036 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DPA1P20036 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC14.22□□□□□ -0.13
HLA-DPA1P20036 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC14.22□□□□□ -0.13
HLA-DPA1P20036 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DPA1P20036 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DPA1P20036 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms