Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.29■□□□□ 0.2
LIG1P18858 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LIG1P18858 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
LIG1P18858 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC16.29■□□□□ 0.2
LIG1P18858 TUBB4AP1-201ENST00000450755 1325 ntBASIC16.29■□□□□ 0.2
LIG1P18858 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC16.29■□□□□ 0.2
LIG1P18858 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC16.29■□□□□ 0.2
LIG1P18858 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC16.29■□□□□ 0.2
LIG1P18858 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
LIG1P18858 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
LIG1P18858 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
LIG1P18858 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
LIG1P18858 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LIG1P18858 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC16.29■□□□□ 0.2
LIG1P18858 SKA2-202ENST00000437036 625 ntTSL 2 BASIC16.29■□□□□ 0.2
LIG1P18858 ST13P19-201ENST00000442505 1124 ntBASIC16.29■□□□□ 0.2
LIG1P18858 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC16.29■□□□□ 0.2
LIG1P18858 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC16.29■□□□□ 0.2
LIG1P18858 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
LIG1P18858 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.29■□□□□ 0.2
LIG1P18858 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC16.29■□□□□ 0.2
LIG1P18858 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.29■□□□□ 0.2
LIG1P18858 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC16.29■□□□□ 0.2
LIG1P18858 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC16.29■□□□□ 0.2
LIG1P18858 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
LIG1P18858 STX3-207ENST00000633708 3111 ntTSL 5 BASIC16.29■□□□□ 0.2
LIG1P18858 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
LIG1P18858 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LIG1P18858 MKRN5P-201ENST00000445263 1467 ntBASIC16.29■□□□□ 0.2
LIG1P18858 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 AC131212.3-201ENST00000624087 4219 ntBASIC16.28■□□□□ 0.2
LIG1P18858 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
LIG1P18858 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
LIG1P18858 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 AL031719.1-201ENST00000623365 2587 ntBASIC16.28■□□□□ 0.2
LIG1P18858 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC16.28■□□□□ 0.2
LIG1P18858 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
LIG1P18858 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC16.28■□□□□ 0.2
LIG1P18858 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.28■□□□□ 0.2
LIG1P18858 RNMTL1P1-201ENST00000454103 560 ntBASIC16.28■□□□□ 0.2
LIG1P18858 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 FAM8A2P-201ENST00000528813 1142 ntBASIC16.28■□□□□ 0.2
LIG1P18858 AC100827.2-201ENST00000563214 1194 ntBASIC16.28■□□□□ 0.2
LIG1P18858 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.28■□□□□ 0.2
LIG1P18858 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
LIG1P18858 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.28■□□□□ 0.2
LIG1P18858 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 AL022328.3-201ENST00000607943 679 ntBASIC16.28■□□□□ 0.2
LIG1P18858 AC007663.3-201ENST00000609632 465 ntBASIC16.28■□□□□ 0.2
LIG1P18858 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LIG1P18858 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC16.28■□□□□ 0.2
LIG1P18858 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 AP000437.1-201ENST00000624057 2085 ntBASIC16.28■□□□□ 0.2
LIG1P18858 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 LAP3P2-201ENST00000454686 1454 ntBASIC16.28■□□□□ 0.2
LIG1P18858 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LIG1P18858 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
LIG1P18858 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
LIG1P18858 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
LIG1P18858 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIG1P18858 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LIG1P18858 AL118506.1-201ENST00000601296 3082 ntBASIC16.27■□□□□ 0.2
LIG1P18858 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC16.27■□□□□ 0.2
LIG1P18858 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
LIG1P18858 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG1P18858 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC16.27■□□□□ 0.2
LIG1P18858 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG1P18858 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC16.27■□□□□ 0.2
LIG1P18858 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG1P18858 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
LIG1P18858 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG1P18858 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LIG1P18858 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC16.27■□□□□ 0.2
LIG1P18858 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC16.27■□□□□ 0.2
LIG1P18858 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms