Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGA1P17096 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC14.41□□□□□ -0.1
HMGA1P17096 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
HMGA1P17096 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGA1P17096 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 AC111170.3-201ENST00000624282 2464 ntBASIC14.41□□□□□ -0.1
HMGA1P17096 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
HMGA1P17096 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.41□□□□□ -0.1
HMGA1P17096 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGA1P17096 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGA1P17096 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGA1P17096 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
HMGA1P17096 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
HMGA1P17096 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
HMGA1P17096 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGA1P17096 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
HMGA1P17096 SURF4-203ENST00000371991 715 ntTSL 3 BASIC14.4□□□□□ -0.1
HMGA1P17096 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGA1P17096 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGA1P17096 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGA1P17096 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGA1P17096 HCG27-204ENST00000424675 895 ntTSL 3 BASIC14.4□□□□□ -0.1
HMGA1P17096 AC041040.1-201ENST00000425197 460 ntBASIC14.4□□□□□ -0.1
HMGA1P17096 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGA1P17096 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC14.4□□□□□ -0.1
HMGA1P17096 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGA1P17096 NALT1-202ENST00000450304 437 ntTSL 3 BASIC14.4□□□□□ -0.1
HMGA1P17096 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC14.4□□□□□ -0.1
HMGA1P17096 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC14.4□□□□□ -0.1
HMGA1P17096 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGA1P17096 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGA1P17096 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC14.4□□□□□ -0.1
HMGA1P17096 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC14.4□□□□□ -0.1
HMGA1P17096 CYP4F36P-201ENST00000589193 186 ntBASIC14.4□□□□□ -0.1
HMGA1P17096 AC005357.2-202ENST00000590507 1060 ntBASIC14.4□□□□□ -0.1
HMGA1P17096 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC14.4□□□□□ -0.1
HMGA1P17096 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGA1P17096 AC026336.4-201ENST00000624565 1050 ntBASIC14.4□□□□□ -0.1
HMGA1P17096 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
HMGA1P17096 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGA1P17096 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGA1P17096 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGA1P17096 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HMGA1P17096 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
HMGA1P17096 AC020763.3-201ENST00000625095 2904 ntBASIC14.4□□□□□ -0.1
HMGA1P17096 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGA1P17096 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HMGA1P17096 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGA1P17096 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGA1P17096 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGA1P17096 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 AC245140.2-201ENST00000624054 1939 ntBASIC14.39□□□□□ -0.11
HMGA1P17096 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.39□□□□□ -0.11
HMGA1P17096 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 AL109809.1-201ENST00000418979 1367 ntBASIC14.39□□□□□ -0.11
HMGA1P17096 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGA1P17096 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HMGA1P17096 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
HMGA1P17096 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC14.39□□□□□ -0.11
HMGA1P17096 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
HMGA1P17096 AC092903.1-201ENST00000466506 262 ntBASIC14.39□□□□□ -0.11
HMGA1P17096 RN7SL128P-201ENST00000467883 305 ntBASIC14.39□□□□□ -0.11
HMGA1P17096 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HMGA1P17096 AC010234.1-201ENST00000494599 870 ntBASIC14.39□□□□□ -0.11
HMGA1P17096 NSD1-211ENST00000511258 809 ntTSL 3 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms