Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC016738.1-201ENST00000452364 3485 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 AC072061.1-201ENST00000569710 2234 ntBASIC14.97□□□□□ -0.01
LIG3P49916 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC14.97□□□□□ -0.01
LIG3P49916 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
LIG3P49916 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 BTBD6P1-201ENST00000412176 1267 ntBASIC14.97□□□□□ -0.01
LIG3P49916 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
LIG3P49916 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC14.97□□□□□ -0.01
LIG3P49916 MTX1P1-201ENST00000440904 838 ntBASIC14.97□□□□□ -0.01
LIG3P49916 USB1-203ENST00000539737 1212 ntTSL 2 BASIC14.97□□□□□ -0.01
LIG3P49916 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC14.97□□□□□ -0.01
LIG3P49916 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.97□□□□□ -0.01
LIG3P49916 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.97□□□□□ -0.01
LIG3P49916 PLEKHG3-203ENST00000471182 3106 ntTSL 5 BASIC14.97□□□□□ -0.01
LIG3P49916 DIDO1-204ENST00000370368 2704 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC14.97□□□□□ -0.01
LIG3P49916 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
LIG3P49916 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
LIG3P49916 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
LIG3P49916 GRM1-202ENST00000355289 3874 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC14.96□□□□□ -0.01
LIG3P49916 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 AL138725.1-201ENST00000407347 1314 ntBASIC14.96□□□□□ -0.01
LIG3P49916 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.96□□□□□ -0.01
LIG3P49916 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 NLGN3-206ENST00000612180 3319 ntTSL 5 BASIC14.96□□□□□ -0.01
LIG3P49916 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC14.96□□□□□ -0.01
LIG3P49916 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC14.96□□□□□ -0.01
LIG3P49916 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC14.96□□□□□ -0.01
LIG3P49916 RN7SKP230-201ENST00000365642 335 ntBASIC14.96□□□□□ -0.01
LIG3P49916 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
LIG3P49916 RN7SKP175-201ENST00000408472 289 ntBASIC14.96□□□□□ -0.01
LIG3P49916 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.96□□□□□ -0.01
LIG3P49916 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC14.96□□□□□ -0.01
LIG3P49916 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.01
LIG3P49916 AC007969.1-201ENST00000433675 447 ntBASIC14.96□□□□□ -0.01
LIG3P49916 CHMP1AP1-201ENST00000445563 662 ntBASIC14.96□□□□□ -0.01
LIG3P49916 PFN1P12-201ENST00000455938 534 ntBASIC14.96□□□□□ -0.01
LIG3P49916 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.96□□□□□ -0.01
LIG3P49916 RPSAP36-202ENST00000494591 1261 ntBASIC14.96□□□□□ -0.01
LIG3P49916 AC108725.1-201ENST00000495472 409 ntBASIC14.96□□□□□ -0.01
LIG3P49916 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
LIG3P49916 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.96□□□□□ -0.01
LIG3P49916 MIR4683-201ENST00000579659 81 ntBASIC14.96□□□□□ -0.01
LIG3P49916 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC14.96□□□□□ -0.01
LIG3P49916 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.96□□□□□ -0.01
LIG3P49916 KLK3-211ENST00000597483 810 ntTSL 2 BASIC14.96□□□□□ -0.01
LIG3P49916 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC14.96□□□□□ -0.01
LIG3P49916 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.96□□□□□ -0.01
LIG3P49916 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 SLC38A7-201ENST00000219320 4392 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
LIG3P49916 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 GOLGA8IP-202ENST00000611635 2100 ntBASIC14.96□□□□□ -0.01
LIG3P49916 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LIG3P49916 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC14.96□□□□□ -0.01
LIG3P49916 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.96□□□□□ -0.02
LIG3P49916 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
LIG3P49916 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC14.96□□□□□ -0.02
LIG3P49916 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
LIG3P49916 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
LIG3P49916 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.96□□□□□ -0.02
LIG3P49916 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
LIG3P49916 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LIG3P49916 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
LIG3P49916 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
LIG3P49916 DPP9-214ENST00000598800 3098 ntTSL 5 BASIC14.96□□□□□ -0.02
LIG3P49916 CARHSP1-218ENST00000614449 2931 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
LIG3P49916 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 140.9 ms