Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SSR1P43307 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SSR1P43307 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 TNN-202ENST00000621086 4234 ntTSL 5 BASIC15.15■□□□□ 0.02
SSR1P43307 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SSR1P43307 TBC1D26-201ENST00000437605 1868 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SSR1P43307 ADCY7-201ENST00000254235 6138 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.15■□□□□ 0.02
SSR1P43307 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.15■□□□□ 0.02
SSR1P43307 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.15■□□□□ 0.02
SSR1P43307 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.15■□□□□ 0.02
SSR1P43307 TMEM198B-204ENST00000484016 896 ntBASIC15.15■□□□□ 0.02
SSR1P43307 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.15■□□□□ 0.02
SSR1P43307 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
SSR1P43307 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.15■□□□□ 0.02
SSR1P43307 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC15.15■□□□□ 0.02
SSR1P43307 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
SSR1P43307 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.15■□□□□ 0.02
SSR1P43307 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.15■□□□□ 0.02
SSR1P43307 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.15■□□□□ 0.02
SSR1P43307 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SSR1P43307 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC15.15■□□□□ 0.02
SSR1P43307 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SSR1P43307 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SSR1P43307 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC15.15■□□□□ 0.02
SSR1P43307 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC15.15■□□□□ 0.02
SSR1P43307 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC15.15■□□□□ 0.02
SSR1P43307 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
SSR1P43307 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SSR1P43307 CETP-203ENST00000566128 1733 ntTSL 5 BASIC15.14■□□□□ 0.01
SSR1P43307 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC15.14■□□□□ 0.01
SSR1P43307 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.14■□□□□ 0.01
SSR1P43307 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC15.14■□□□□ 0.01
SSR1P43307 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 CNTNAP5-202ENST00000431078 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 EIF2AK1-201ENST00000199389 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SSR1P43307 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.14■□□□□ 0.01
SSR1P43307 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.14■□□□□ 0.01
SSR1P43307 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SSR1P43307 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.14■□□□□ 0.01
SSR1P43307 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.14■□□□□ 0.01
SSR1P43307 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC15.14■□□□□ 0.01
SSR1P43307 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.14■□□□□ 0.01
SSR1P43307 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.14■□□□□ 0.01
SSR1P43307 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC15.14■□□□□ 0.01
SSR1P43307 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.14■□□□□ 0.01
SSR1P43307 AC021016.3-201ENST00000608367 477 ntBASIC15.14■□□□□ 0.01
SSR1P43307 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.14■□□□□ 0.01
SSR1P43307 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC15.14■□□□□ 0.01
SSR1P43307 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 ARSD-202ENST00000381154 5159 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 STXBP1-202ENST00000373302 3967 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SSR1P43307 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SSR1P43307 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSR1P43307 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15.13■□□□□ 0.01
SSR1P43307 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSR1P43307 TBX3-201ENST00000257566 4208 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SSR1P43307 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSR1P43307 CACNA1G-217ENST00000507336 7116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSR1P43307 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SSR1P43307 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
SSR1P43307 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SSR1P43307 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
SSR1P43307 TMEM131L-203ENST00000409959 5017 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SSR1P43307 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms