Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
COL5A3P25940 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 S100A6-202ENST00000368720 673 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
COL5A3P25940 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC17■□□□□ 0.31
COL5A3P25940 AL356653.1-201ENST00000402743 360 ntBASIC17■□□□□ 0.31
COL5A3P25940 RPS7-202ENST00000403564 764 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
COL5A3P25940 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC17■□□□□ 0.31
COL5A3P25940 CYP4F29P-202ENST00000428301 1279 ntTSL 2 BASIC17■□□□□ 0.31
COL5A3P25940 RN7SL47P-201ENST00000488710 299 ntBASIC17■□□□□ 0.31
COL5A3P25940 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC17■□□□□ 0.31
COL5A3P25940 H1FOO-202ENST00000503977 881 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 IGHVII-33-1-201ENST00000524010 280 ntBASIC17■□□□□ 0.31
COL5A3P25940 AC100858.2-201ENST00000531948 487 ntTSL 3 BASIC17■□□□□ 0.31
COL5A3P25940 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
COL5A3P25940 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC17■□□□□ 0.31
COL5A3P25940 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC17■□□□□ 0.31
COL5A3P25940 AC009118.3-201ENST00000622896 873 ntBASIC17■□□□□ 0.31
COL5A3P25940 AC005609.1-201ENST00000625195 617 ntTSL 5 BASIC17■□□□□ 0.31
COL5A3P25940 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC17■□□□□ 0.31
COL5A3P25940 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
COL5A3P25940 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC17■□□□□ 0.31
COL5A3P25940 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 SERPING1-202ENST00000340687 1719 ntTSL 5 BASIC17■□□□□ 0.31
COL5A3P25940 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL5A3P25940 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
COL5A3P25940 SLC7A9-201ENST00000023064 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
COL5A3P25940 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 MRRF-201ENST00000297908 1841 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 AC007336.3-201ENST00000623886 2160 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 SCGB1C1-201ENST00000342878 431 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 CREB3L4-203ENST00000368601 950 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
COL5A3P25940 CACYBPP3-201ENST00000406011 625 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 RNA5SP407-201ENST00000410275 110 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 PRDX3P2-201ENST00000447051 611 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 RNASEH2CP1-201ENST00000454281 502 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 AC008021.1-201ENST00000474180 414 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC16.99■□□□□ 0.31
COL5A3P25940 MIR4539-201ENST00000579784 60 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 IFNAR2-201ENST00000342101 2606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 AC020917.4-201ENST00000623994 1999 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 SLC26A5-203ENST00000354356 2686 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
COL5A3P25940 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 TUBB8P5-201ENST00000445286 1351 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 AC097474.1-201ENST00000506481 1371 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
COL5A3P25940 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC16.99■□□□□ 0.31
COL5A3P25940 AC135506.1-201ENST00000603877 1799 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 Z97653.2-201ENST00000623057 1418 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
COL5A3P25940 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 FAM27E3-201ENST00000418795 1593 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
COL5A3P25940 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 CDCA7L-201ENST00000356195 2915 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 TIMP1-201ENST00000218388 892 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 TIMP1-202ENST00000377017 626 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 IL1RN-205ENST00000409930 848 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL5A3P25940 HMGN1P4-201ENST00000419500 290 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 CTLA4-203ENST00000427473 969 ntTSL 5 BASIC16.99■□□□□ 0.31
COL5A3P25940 SAP18P2-201ENST00000434334 459 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 AC024028.1-201ENST00000437145 437 ntTSL 3 BASIC16.99■□□□□ 0.31
COL5A3P25940 AC010677.1-201ENST00000441690 412 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 HNRNPA1P4-201ENST00000509706 756 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 AC099343.1-201ENST00000513481 609 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 AC104117.4-201ENST00000521486 847 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 MST1L-204ENST00000545160 559 ntTSL 4 BASIC16.99■□□□□ 0.31
COL5A3P25940 MYL6-215ENST00000549566 685 ntTSL 2 BASIC16.99■□□□□ 0.31
COL5A3P25940 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.99■□□□□ 0.31
COL5A3P25940 BX510359.7-201ENST00000619819 630 ntBASIC16.99■□□□□ 0.31
COL5A3P25940 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A3P25940 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A3P25940 CHCHD7-218ENST00000523975 1805 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
COL5A3P25940 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms