Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 HNRNPA1P40-201ENST00000426371 1278 ntBASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 RNA5SP486-201ENST00000515961 83 ntBASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 AC090617.6-201ENST00000572790 443 ntTSL 3 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 AC005498.2-205ENST00000593218 784 ntBASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 ZNF799-202ENST00000430385 2583 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 AC004899.2-201ENST00000622993 3860 ntBASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 FAM118A-201ENST00000216214 3458 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 TMEM233-201ENST00000426426 3081 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 TBC1D26-201ENST00000437605 1868 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 GRIPAP1-215ENST00000622599 2881 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 FAM86JP-201ENST00000467239 1910 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC13.8□□□□□ -0.2
CCDC28BQ9BUN5 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 PI4KAP2-201ENST00000360806 2080 ntBASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 PNMT-202ENST00000394246 821 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 API5-211ENST00000534695 560 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 NAA60-208ENST00000570819 833 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 RN7SL713P-201ENST00000582127 302 ntBASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 AC090386.2-201ENST00000623010 1039 ntBASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 EPS15L1-202ENST00000455140 3266 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 AL357140.3-201ENST00000639753 1983 ntBASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 AL008718.2-201ENST00000609206 1313 ntBASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 DGKA-202ENST00000394147 2770 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC13.79□□□□□ -0.2
CCDC28BQ9BUN5 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 ILDR1-201ENST00000273691 2659 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 FAM214B-208ENST00000605244 3016 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 BEND6-202ENST00000370746 2379 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 FAM90A26-201ENST00000512047 2492 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.78□□□□□ -0.2
CCDC28BQ9BUN5 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms