Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CIITAP33076 SNORA50.1-201ENST00000628590 135 ntBASIC15.81■□□□□ 0.12
CIITAP33076 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.81■□□□□ 0.12
CIITAP33076 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CIITAP33076 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CIITAP33076 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CIITAP33076 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CIITAP33076 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CIITAP33076 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.81■□□□□ 0.12
CIITAP33076 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
CIITAP33076 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CIITAP33076 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
CIITAP33076 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CIITAP33076 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.8■□□□□ 0.12
CIITAP33076 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC15.8■□□□□ 0.12
CIITAP33076 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 MSANTD2P1-201ENST00000445341 1368 ntBASIC15.8■□□□□ 0.12
CIITAP33076 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC15.8■□□□□ 0.12
CIITAP33076 CSNK1G2P1-201ENST00000442675 955 ntBASIC15.8■□□□□ 0.12
CIITAP33076 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC15.8■□□□□ 0.12
CIITAP33076 RPL18AP3-201ENST00000462885 528 ntBASIC15.8■□□□□ 0.12
CIITAP33076 RNA5SP417-201ENST00000516459 108 ntBASIC15.8■□□□□ 0.12
CIITAP33076 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
CIITAP33076 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC15.8■□□□□ 0.12
CIITAP33076 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC15.8■□□□□ 0.12
CIITAP33076 MIR3147-201ENST00000577811 66 ntBASIC15.8■□□□□ 0.12
CIITAP33076 AL031673.1-201ENST00000611460 466 ntBASIC15.8■□□□□ 0.12
CIITAP33076 AC005618.3-201ENST00000624928 458 ntBASIC15.8■□□□□ 0.12
CIITAP33076 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CIITAP33076 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CIITAP33076 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CIITAP33076 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CIITAP33076 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
CIITAP33076 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CIITAP33076 MARK2P9-201ENST00000430958 1727 ntBASIC15.8■□□□□ 0.12
CIITAP33076 CETP-203ENST00000566128 1733 ntTSL 5 BASIC15.8■□□□□ 0.12
CIITAP33076 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 NRADDP-202ENST00000641269 1585 ntBASIC15.79■□□□□ 0.12
CIITAP33076 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CIITAP33076 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 AC072061.1-201ENST00000569710 2234 ntBASIC15.79■□□□□ 0.12
CIITAP33076 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CIITAP33076 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.79■□□□□ 0.12
CIITAP33076 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CIITAP33076 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CIITAP33076 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CIITAP33076 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC15.79■□□□□ 0.12
CIITAP33076 RNVU1-8-201ENST00000364272 125 ntBASIC15.79■□□□□ 0.12
CIITAP33076 HIST2H2BA-201ENST00000412169 381 ntBASIC15.79■□□□□ 0.12
CIITAP33076 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC15.79■□□□□ 0.12
CIITAP33076 AC005722.1-201ENST00000431878 964 ntBASIC15.79■□□□□ 0.12
CIITAP33076 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC15.79■□□□□ 0.12
CIITAP33076 AC007279.1-201ENST00000448547 837 ntBASIC15.79■□□□□ 0.12
CIITAP33076 RGS5-216ENST00000449680 788 ntTSL 3 BASIC15.79■□□□□ 0.12
CIITAP33076 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC15.79■□□□□ 0.12
CIITAP33076 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC15.79■□□□□ 0.12
CIITAP33076 MIR4706-201ENST00000582134 82 ntBASIC15.79■□□□□ 0.12
CIITAP33076 MIR4326-201ENST00000582203 59 ntBASIC15.79■□□□□ 0.12
CIITAP33076 GAS7-216ENST00000583882 553 ntTSL 5 BASIC15.79■□□□□ 0.12
CIITAP33076 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC15.79■□□□□ 0.12
CIITAP33076 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC15.79■□□□□ 0.12
CIITAP33076 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC15.79■□□□□ 0.12
CIITAP33076 AC005041.3-201ENST00000606287 649 ntBASIC15.79■□□□□ 0.12
CIITAP33076 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
CIITAP33076 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CIITAP33076 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15.79■□□□□ 0.12
CIITAP33076 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
CIITAP33076 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CIITAP33076 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CIITAP33076 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC15.79■□□□□ 0.12
CIITAP33076 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms