Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHGA1Q9Y5H4 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.76■■□□□ 1.07
PCDHGA1Q9Y5H4 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHGA1Q9Y5H4 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
PCDHGA1Q9Y5H4 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.75■■□□□ 1.07
PCDHGA1Q9Y5H4 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.75■■□□□ 1.07
PCDHGA1Q9Y5H4 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.75■■□□□ 1.07
PCDHGA1Q9Y5H4 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHGA1Q9Y5H4 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHGA1Q9Y5H4 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHGA1Q9Y5H4 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHGA1Q9Y5H4 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.75■■□□□ 1.07
PCDHGA1Q9Y5H4 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.75■■□□□ 1.07
PCDHGA1Q9Y5H4 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 NTF6G-201ENST00000591094 616 ntBASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 MIR6084-201ENST00000622012 110 ntBASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHGA1Q9Y5H4 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.73■■□□□ 1.07
PCDHGA1Q9Y5H4 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHGA1Q9Y5H4 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.73■■□□□ 1.07
PCDHGA1Q9Y5H4 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHGA1Q9Y5H4 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.73■■□□□ 1.07
PCDHGA1Q9Y5H4 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.07
PCDHGA1Q9Y5H4 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
PCDHGA1Q9Y5H4 LINC02228-203ENST00000641970 1355 ntBASIC21.73■■□□□ 1.07
PCDHGA1Q9Y5H4 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHGA1Q9Y5H4 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.72■■□□□ 1.07
PCDHGA1Q9Y5H4 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHGA1Q9Y5H4 TERF1P2-201ENST00000583350 1212 ntBASIC21.72■■□□□ 1.07
PCDHGA1Q9Y5H4 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.72■■□□□ 1.07
PCDHGA1Q9Y5H4 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
PCDHGA1Q9Y5H4 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHGA1Q9Y5H4 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.71■■□□□ 1.07
PCDHGA1Q9Y5H4 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHGA1Q9Y5H4 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHGA1Q9Y5H4 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHGA1Q9Y5H4 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.71■■□□□ 1.07
PCDHGA1Q9Y5H4 KRT18P14-201ENST00000534205 1250 ntBASIC21.71■■□□□ 1.07
PCDHGA1Q9Y5H4 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.71■■□□□ 1.07
PCDHGA1Q9Y5H4 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.71■■□□□ 1.07
PCDHGA1Q9Y5H4 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHGA1Q9Y5H4 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHGA1Q9Y5H4 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHGA1Q9Y5H4 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
PCDHGA1Q9Y5H4 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.7■■□□□ 1.06
PCDHGA1Q9Y5H4 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.7■■□□□ 1.06
PCDHGA1Q9Y5H4 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHGA1Q9Y5H4 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
PCDHGA1Q9Y5H4 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHGA1Q9Y5H4 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHGA1Q9Y5H4 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.69■■□□□ 1.06
PCDHGA1Q9Y5H4 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.69■■□□□ 1.06
PCDHGA1Q9Y5H4 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.69■■□□□ 1.06
PCDHGA1Q9Y5H4 AC133637.1-201ENST00000624115 1537 ntBASIC21.69■■□□□ 1.06
PCDHGA1Q9Y5H4 ALDH1A3-203ENST00000557963 1670 ntBASIC21.69■■□□□ 1.06
PCDHGA1Q9Y5H4 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.68■■□□□ 1.06
PCDHGA1Q9Y5H4 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA1Q9Y5H4 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
PCDHGA1Q9Y5H4 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
PCDHGA1Q9Y5H4 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.68■■□□□ 1.06
PCDHGA1Q9Y5H4 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA1Q9Y5H4 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.68■■□□□ 1.06
PCDHGA1Q9Y5H4 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.68■■□□□ 1.06
PCDHGA1Q9Y5H4 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA1Q9Y5H4 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA1Q9Y5H4 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA1Q9Y5H4 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHGA1Q9Y5H4 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA1Q9Y5H4 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA1Q9Y5H4 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA1Q9Y5H4 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
PCDHGA1Q9Y5H4 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA1Q9Y5H4 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA1Q9Y5H4 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.67■■□□□ 1.06
PCDHGA1Q9Y5H4 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA1Q9Y5H4 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA1Q9Y5H4 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHGA1Q9Y5H4 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.66■■□□□ 1.06
PCDHGA1Q9Y5H4 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
PCDHGA1Q9Y5H4 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHGA1Q9Y5H4 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHGA1Q9Y5H4 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
PCDHGA1Q9Y5H4 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
PCDHGA1Q9Y5H4 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.66■■□□□ 1.06
PCDHGA1Q9Y5H4 AL499627.2-201ENST00000606283 725 ntBASIC21.66■■□□□ 1.06
PCDHGA1Q9Y5H4 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
PCDHGA1Q9Y5H4 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.66■■□□□ 1.06
PCDHGA1Q9Y5H4 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHGA1Q9Y5H4 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.66■■□□□ 1.06
PCDHGA1Q9Y5H4 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms