Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.94■■□□□ 1.1
PCDHB3Q9Y5E6 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.94■■□□□ 1.1
PCDHB3Q9Y5E6 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB3Q9Y5E6 AC133561.4-201ENST00000566112 224 ntBASIC21.94■■□□□ 1.1
PCDHB3Q9Y5E6 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PCDHB3Q9Y5E6 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.94■■□□□ 1.1
PCDHB3Q9Y5E6 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PCDHB3Q9Y5E6 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDHB3Q9Y5E6 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDHB3Q9Y5E6 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDHB3Q9Y5E6 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PCDHB3Q9Y5E6 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PCDHB3Q9Y5E6 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PCDHB3Q9Y5E6 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
PCDHB3Q9Y5E6 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PCDHB3Q9Y5E6 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
PCDHB3Q9Y5E6 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.93■■□□□ 1.1
PCDHB3Q9Y5E6 C9orf163-202ENST00000624034 2573 ntBASIC21.93■■□□□ 1.1
PCDHB3Q9Y5E6 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
PCDHB3Q9Y5E6 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
PCDHB3Q9Y5E6 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHB3Q9Y5E6 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.92■■□□□ 1.1
PCDHB3Q9Y5E6 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
PCDHB3Q9Y5E6 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHB3Q9Y5E6 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHB3Q9Y5E6 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.92■■□□□ 1.1
PCDHB3Q9Y5E6 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.92■■□□□ 1.1
PCDHB3Q9Y5E6 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHB3Q9Y5E6 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PCDHB3Q9Y5E6 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.91■■□□□ 1.1
PCDHB3Q9Y5E6 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHB3Q9Y5E6 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHB3Q9Y5E6 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHB3Q9Y5E6 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHB3Q9Y5E6 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHB3Q9Y5E6 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHB3Q9Y5E6 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PCDHB3Q9Y5E6 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.91■■□□□ 1.1
PCDHB3Q9Y5E6 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHB3Q9Y5E6 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHB3Q9Y5E6 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHB3Q9Y5E6 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHB3Q9Y5E6 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.9■■□□□ 1.1
PCDHB3Q9Y5E6 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.9■■□□□ 1.1
PCDHB3Q9Y5E6 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.9■■□□□ 1.1
PCDHB3Q9Y5E6 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHB3Q9Y5E6 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHB3Q9Y5E6 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.9■■□□□ 1.1
PCDHB3Q9Y5E6 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHB3Q9Y5E6 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PCDHB3Q9Y5E6 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.9■■□□□ 1.1
PCDHB3Q9Y5E6 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PCDHB3Q9Y5E6 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
PCDHB3Q9Y5E6 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.89■■□□□ 1.09
PCDHB3Q9Y5E6 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
PCDHB3Q9Y5E6 AC131274.2-201ENST00000580697 1507 ntBASIC21.89■■□□□ 1.09
PCDHB3Q9Y5E6 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.89■■□□□ 1.09
PCDHB3Q9Y5E6 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDHB3Q9Y5E6 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PCDHB3Q9Y5E6 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
PCDHB3Q9Y5E6 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDHB3Q9Y5E6 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
PCDHB3Q9Y5E6 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PCDHB3Q9Y5E6 AC005703.6-201ENST00000623265 1329 ntBASIC21.87■■□□□ 1.09
PCDHB3Q9Y5E6 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
PCDHB3Q9Y5E6 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
PCDHB3Q9Y5E6 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.87■■□□□ 1.09
PCDHB3Q9Y5E6 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.87■■□□□ 1.09
PCDHB3Q9Y5E6 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
PCDHB3Q9Y5E6 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHB3Q9Y5E6 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.86■■□□□ 1.09
PCDHB3Q9Y5E6 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHB3Q9Y5E6 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHB3Q9Y5E6 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHB3Q9Y5E6 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHB3Q9Y5E6 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.86■■□□□ 1.09
PCDHB3Q9Y5E6 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHB3Q9Y5E6 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.86■■□□□ 1.09
PCDHB3Q9Y5E6 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PCDHB3Q9Y5E6 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.86■■□□□ 1.09
PCDHB3Q9Y5E6 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.86■■□□□ 1.09
PCDHB3Q9Y5E6 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.86■■□□□ 1.09
PCDHB3Q9Y5E6 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHB3Q9Y5E6 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms