Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
VPS13AQ96RL7 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
VPS13AQ96RL7 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
VPS13AQ96RL7 AC097639.1-201ENST00000565519 1891 ntBASIC22.6■■□□□ 1.21
VPS13AQ96RL7 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS13AQ96RL7 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC22.6■■□□□ 1.21
VPS13AQ96RL7 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC22.6■■□□□ 1.21
VPS13AQ96RL7 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
VPS13AQ96RL7 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
VPS13AQ96RL7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22.59■■□□□ 1.21
VPS13AQ96RL7 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
VPS13AQ96RL7 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
VPS13AQ96RL7 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
VPS13AQ96RL7 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
VPS13AQ96RL7 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC22.59■■□□□ 1.21
VPS13AQ96RL7 IGHV3-19-201ENST00000521488 291 ntBASIC22.59■■□□□ 1.21
VPS13AQ96RL7 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
VPS13AQ96RL7 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC22.59■■□□□ 1.21
VPS13AQ96RL7 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
VPS13AQ96RL7 HSCB-202ENST00000398941 955 ntTSL 2 BASIC22.58■■□□□ 1.21
VPS13AQ96RL7 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
VPS13AQ96RL7 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
VPS13AQ96RL7 AC006970.2-201ENST00000450065 779 ntBASIC22.58■■□□□ 1.21
VPS13AQ96RL7 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
VPS13AQ96RL7 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC22.58■■□□□ 1.21
VPS13AQ96RL7 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC22.58■■□□□ 1.21
VPS13AQ96RL7 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
VPS13AQ96RL7 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
VPS13AQ96RL7 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.58■■□□□ 1.2
VPS13AQ96RL7 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
VPS13AQ96RL7 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.58■■□□□ 1.2
VPS13AQ96RL7 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
VPS13AQ96RL7 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC22.57■■□□□ 1.2
VPS13AQ96RL7 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
VPS13AQ96RL7 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
VPS13AQ96RL7 AP005435.1-201ENST00000529293 1178 ntBASIC22.57■■□□□ 1.2
VPS13AQ96RL7 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC22.57■■□□□ 1.2
VPS13AQ96RL7 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
VPS13AQ96RL7 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC22.57■■□□□ 1.2
VPS13AQ96RL7 GPX1P1-201ENST00000388829 606 ntBASIC22.57■■□□□ 1.2
VPS13AQ96RL7 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC22.57■■□□□ 1.2
VPS13AQ96RL7 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
VPS13AQ96RL7 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC22.56■■□□□ 1.2
VPS13AQ96RL7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
VPS13AQ96RL7 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.56■■□□□ 1.2
VPS13AQ96RL7 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
VPS13AQ96RL7 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
VPS13AQ96RL7 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
VPS13AQ96RL7 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC22.55■■□□□ 1.2
VPS13AQ96RL7 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
VPS13AQ96RL7 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC22.55■■□□□ 1.2
VPS13AQ96RL7 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
VPS13AQ96RL7 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC22.55■■□□□ 1.2
VPS13AQ96RL7 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 KLF13-207ENST00000560473 489 ntTSL 3 BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC22.54■■□□□ 1.2
VPS13AQ96RL7 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VPS13AQ96RL7 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VPS13AQ96RL7 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
VPS13AQ96RL7 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC22.53■■□□□ 1.2
VPS13AQ96RL7 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
VPS13AQ96RL7 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC22.53■■□□□ 1.2
VPS13AQ96RL7 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC22.53■■□□□ 1.2
VPS13AQ96RL7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.53■■□□□ 1.2
VPS13AQ96RL7 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
VPS13AQ96RL7 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC22.53■■□□□ 1.2
VPS13AQ96RL7 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
VPS13AQ96RL7 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
VPS13AQ96RL7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
VPS13AQ96RL7 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
VPS13AQ96RL7 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC22.52■■□□□ 1.2
VPS13AQ96RL7 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC22.52■■□□□ 1.2
VPS13AQ96RL7 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
VPS13AQ96RL7 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
VPS13AQ96RL7 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
VPS13AQ96RL7 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
VPS13AQ96RL7 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC22.51■■□□□ 1.19
VPS13AQ96RL7 GALNS-213ENST00000569433 723 ntTSL 3 BASIC22.51■■□□□ 1.19
VPS13AQ96RL7 TBCB-214ENST00000629269 413 ntTSL 5 BASIC22.51■■□□□ 1.19
VPS13AQ96RL7 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
VPS13AQ96RL7 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
VPS13AQ96RL7 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
VPS13AQ96RL7 AC091060.1-201ENST00000623524 1766 ntBASIC22.51■■□□□ 1.19
VPS13AQ96RL7 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
VPS13AQ96RL7 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
VPS13AQ96RL7 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC22.5■■□□□ 1.19
VPS13AQ96RL7 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC22.5■■□□□ 1.19
VPS13AQ96RL7 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC22.5■■□□□ 1.19
VPS13AQ96RL7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms