Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
VPS52Q8N1B4 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
VPS52Q8N1B4 IRS3P-201ENST00000223076 1006 ntBASIC24.3■■□□□ 1.48
VPS52Q8N1B4 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC24.3■■□□□ 1.48
VPS52Q8N1B4 PARL-206ENST00000435888 1098 ntTSL 5 BASIC24.3■■□□□ 1.48
VPS52Q8N1B4 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
VPS52Q8N1B4 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
VPS52Q8N1B4 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC24.3■■□□□ 1.48
VPS52Q8N1B4 AC087623.3-201ENST00000607047 1098 ntBASIC24.3■■□□□ 1.48
VPS52Q8N1B4 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
VPS52Q8N1B4 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
VPS52Q8N1B4 LTK-203ENST00000453182 2412 ntTSL 2 BASIC24.3■■□□□ 1.48
VPS52Q8N1B4 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
VPS52Q8N1B4 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VPS52Q8N1B4 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC24.29■■□□□ 1.48
VPS52Q8N1B4 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC24.29■■□□□ 1.48
VPS52Q8N1B4 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC24.29■■□□□ 1.48
VPS52Q8N1B4 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC24.29■■□□□ 1.48
VPS52Q8N1B4 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VPS52Q8N1B4 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VPS52Q8N1B4 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC24.29■■□□□ 1.48
VPS52Q8N1B4 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VPS52Q8N1B4 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS52Q8N1B4 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS52Q8N1B4 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS52Q8N1B4 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VPS52Q8N1B4 PLD4-205ENST00000553861 667 ntTSL 2 BASIC24.28■■□□□ 1.48
VPS52Q8N1B4 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC24.28■■□□□ 1.48
VPS52Q8N1B4 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VPS52Q8N1B4 AC009086.3-201ENST00000623486 1008 ntBASIC24.28■■□□□ 1.48
VPS52Q8N1B4 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS52Q8N1B4 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VPS52Q8N1B4 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC24.28■■□□□ 1.48
VPS52Q8N1B4 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
VPS52Q8N1B4 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
VPS52Q8N1B4 MIR3181-201ENST00000578512 73 ntBASIC24.27■■□□□ 1.48
VPS52Q8N1B4 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC24.27■■□□□ 1.48
VPS52Q8N1B4 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
VPS52Q8N1B4 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 RHOF-204ENST00000537265 699 ntTSL 2 BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.26■■□□□ 1.47
VPS52Q8N1B4 AL139125.2-201ENST00000623134 1869 ntBASIC24.26■■□□□ 1.47
VPS52Q8N1B4 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
VPS52Q8N1B4 CD37-213ENST00000598095 1598 ntTSL 2 BASIC24.25■■□□□ 1.47
VPS52Q8N1B4 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
VPS52Q8N1B4 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC24.25■■□□□ 1.47
VPS52Q8N1B4 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC24.25■■□□□ 1.47
VPS52Q8N1B4 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC24.25■■□□□ 1.47
VPS52Q8N1B4 AC233992.3-201ENST00000607491 485 ntBASIC24.25■■□□□ 1.47
VPS52Q8N1B4 NKILA-201ENST00000613231 537 ntTSL 4 BASIC24.25■■□□□ 1.47
VPS52Q8N1B4 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
VPS52Q8N1B4 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 VGF-203ENST00000611537 1622 ntTSL 5 BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS52Q8N1B4 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
VPS52Q8N1B4 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
VPS52Q8N1B4 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC24.23■■□□□ 1.47
VPS52Q8N1B4 BX842568.3-201ENST00000418104 571 ntBASIC24.23■■□□□ 1.47
VPS52Q8N1B4 AL162430.1-201ENST00000480705 870 ntBASIC24.23■■□□□ 1.47
VPS52Q8N1B4 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC24.23■■□□□ 1.47
VPS52Q8N1B4 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC24.23■■□□□ 1.47
VPS52Q8N1B4 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
VPS52Q8N1B4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC24.23■■□□□ 1.47
VPS52Q8N1B4 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
VPS52Q8N1B4 AP003733.4-201ENST00000623785 1697 ntBASIC24.23■■□□□ 1.47
VPS52Q8N1B4 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC24.23■■□□□ 1.47
VPS52Q8N1B4 HLA-L-211ENST00000482052 1765 ntBASIC24.23■■□□□ 1.47
VPS52Q8N1B4 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC24.23■■□□□ 1.47
VPS52Q8N1B4 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS52Q8N1B4 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC24.22■■□□□ 1.47
VPS52Q8N1B4 AL161729.1-201ENST00000604104 1402 ntBASIC24.22■■□□□ 1.47
VPS52Q8N1B4 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS52Q8N1B4 JTB-203ENST00000368589 1216 ntTSL 2 BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms