Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LSM3P62310 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LSM3P62310 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LSM3P62310 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.23■□□□□ 0.83
LSM3P62310 AC044849.2-201ENST00000606596 710 ntBASIC20.23■□□□□ 0.83
LSM3P62310 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LSM3P62310 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LSM3P62310 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LSM3P62310 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
LSM3P62310 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
LSM3P62310 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LSM3P62310 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
LSM3P62310 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LSM3P62310 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.22■□□□□ 0.83
LSM3P62310 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.22■□□□□ 0.83
LSM3P62310 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
LSM3P62310 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
LSM3P62310 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
LSM3P62310 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LSM3P62310 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
LSM3P62310 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LSM3P62310 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LSM3P62310 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.22■□□□□ 0.83
LSM3P62310 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.22■□□□□ 0.83
LSM3P62310 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.21■□□□□ 0.83
LSM3P62310 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LSM3P62310 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
LSM3P62310 C11orf96-202ENST00000528572 1834 ntBASIC20.21■□□□□ 0.83
LSM3P62310 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LSM3P62310 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LSM3P62310 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LSM3P62310 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
LSM3P62310 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LSM3P62310 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LSM3P62310 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
LSM3P62310 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LSM3P62310 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LSM3P62310 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LSM3P62310 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.2■□□□□ 0.82
LSM3P62310 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.2■□□□□ 0.82
LSM3P62310 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LSM3P62310 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LSM3P62310 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LSM3P62310 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
LSM3P62310 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LSM3P62310 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
LSM3P62310 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LSM3P62310 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LSM3P62310 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.19■□□□□ 0.82
LSM3P62310 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LSM3P62310 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LSM3P62310 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
LSM3P62310 ESRRAP2-201ENST00000418437 1549 ntBASIC20.19■□□□□ 0.82
LSM3P62310 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.19■□□□□ 0.82
LSM3P62310 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC20.19■□□□□ 0.82
LSM3P62310 AP006261.1-201ENST00000584783 668 ntBASIC20.19■□□□□ 0.82
LSM3P62310 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.19■□□□□ 0.82
LSM3P62310 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LSM3P62310 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.19■□□□□ 0.82
LSM3P62310 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.19■□□□□ 0.82
LSM3P62310 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
LSM3P62310 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LSM3P62310 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LSM3P62310 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
LSM3P62310 DUX4L13-201ENST00000554103 1267 ntBASIC20.18■□□□□ 0.82
LSM3P62310 DUX4L15-201ENST00000611059 1267 ntBASIC20.18■□□□□ 0.82
LSM3P62310 DUX4L23-201ENST00000615195 1269 ntBASIC20.18■□□□□ 0.82
LSM3P62310 DUX4L24-201ENST00000617576 1269 ntBASIC20.18■□□□□ 0.82
LSM3P62310 DUX4L22-201ENST00000618238 1269 ntBASIC20.18■□□□□ 0.82
LSM3P62310 DUX4L20-201ENST00000619712 1269 ntBASIC20.18■□□□□ 0.82
LSM3P62310 DUX4L21-201ENST00000622058 1269 ntBASIC20.18■□□□□ 0.82
LSM3P62310 DUX4L10-201ENST00000622460 1267 ntBASIC20.18■□□□□ 0.82
LSM3P62310 DUX4L25-201ENST00000624915 1269 ntBASIC20.18■□□□□ 0.82
LSM3P62310 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LSM3P62310 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LSM3P62310 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LSM3P62310 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LSM3P62310 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LSM3P62310 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LSM3P62310 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LSM3P62310 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LSM3P62310 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LSM3P62310 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LSM3P62310 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LSM3P62310 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
LSM3P62310 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LSM3P62310 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LSM3P62310 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.17■□□□□ 0.82
LSM3P62310 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LSM3P62310 AC026310.3-201ENST00000625186 2373 ntBASIC20.17■□□□□ 0.82
LSM3P62310 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
LSM3P62310 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
LSM3P62310 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.17■□□□□ 0.82
LSM3P62310 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LSM3P62310 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
LSM3P62310 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
LSM3P62310 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LSM3P62310 AC092053.2-201ENST00000640557 1818 ntBASIC20.16■□□□□ 0.82
LSM3P62310 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.16■□□□□ 0.82
LSM3P62310 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms