Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.89■□□□□ 0.94
CDH12P55289 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDH12P55289 AC131274.2-201ENST00000580697 1507 ntBASIC20.89■□□□□ 0.94
CDH12P55289 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDH12P55289 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.89■□□□□ 0.93
CDH12P55289 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.89■□□□□ 0.93
CDH12P55289 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.89■□□□□ 0.93
CDH12P55289 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.89■□□□□ 0.93
CDH12P55289 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.93
CDH12P55289 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDH12P55289 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.89■□□□□ 0.93
CDH12P55289 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDH12P55289 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDH12P55289 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDH12P55289 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDH12P55289 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDH12P55289 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDH12P55289 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDH12P55289 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDH12P55289 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDH12P55289 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CDH12P55289 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.88■□□□□ 0.93
CDH12P55289 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDH12P55289 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CDH12P55289 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDH12P55289 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CDH12P55289 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDH12P55289 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDH12P55289 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH12P55289 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
CDH12P55289 ALDH1A3-203ENST00000557963 1670 ntBASIC20.87■□□□□ 0.93
CDH12P55289 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH12P55289 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CDH12P55289 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDH12P55289 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.87■□□□□ 0.93
CDH12P55289 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.87■□□□□ 0.93
CDH12P55289 AC012354.3-201ENST00000623734 483 ntBASIC20.87■□□□□ 0.93
CDH12P55289 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDH12P55289 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH12P55289 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH12P55289 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDH12P55289 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDH12P55289 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDH12P55289 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDH12P55289 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDH12P55289 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.86■□□□□ 0.93
CDH12P55289 LINC00526-201ENST00000581067 1875 ntBASIC20.86■□□□□ 0.93
CDH12P55289 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.85■□□□□ 0.93
CDH12P55289 KRT18P24-201ENST00000344739 1156 ntBASIC20.85■□□□□ 0.93
CDH12P55289 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.85■□□□□ 0.93
CDH12P55289 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH12P55289 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH12P55289 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CDH12P55289 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CDH12P55289 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDH12P55289 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CDH12P55289 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CDH12P55289 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH12P55289 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH12P55289 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH12P55289 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH12P55289 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.84■□□□□ 0.93
CDH12P55289 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.84■□□□□ 0.93
CDH12P55289 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.84■□□□□ 0.93
CDH12P55289 AL033527.3-201ENST00000566366 1196 ntBASIC20.84■□□□□ 0.93
CDH12P55289 THA1P-201ENST00000590384 1145 ntBASIC20.84■□□□□ 0.93
CDH12P55289 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDH12P55289 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH12P55289 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.84■□□□□ 0.93
CDH12P55289 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CDH12P55289 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CDH12P55289 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CDH12P55289 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CDH12P55289 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH12P55289 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH12P55289 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH12P55289 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH12P55289 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
CDH12P55289 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
CDH12P55289 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
CDH12P55289 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CDH12P55289 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.83■□□□□ 0.93
CDH12P55289 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.83■□□□□ 0.93
CDH12P55289 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.83■□□□□ 0.93
CDH12P55289 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CDH12P55289 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.83■□□□□ 0.92
CDH12P55289 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
CDH12P55289 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
CDH12P55289 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH12P55289 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH12P55289 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH12P55289 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH12P55289 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.82■□□□□ 0.92
CDH12P55289 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH12P55289 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH12P55289 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CDH12P55289 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.82■□□□□ 0.92
CDH12P55289 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.82■□□□□ 0.92
CDH12P55289 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.82■□□□□ 0.92
CDH12P55289 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms