Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LIMK1P53667 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC22.32■■□□□ 1.16
LIMK1P53667 KRT18P14-201ENST00000534205 1250 ntBASIC22.32■■□□□ 1.16
LIMK1P53667 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
LIMK1P53667 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
LIMK1P53667 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.32■■□□□ 1.16
LIMK1P53667 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.31■■□□□ 1.16
LIMK1P53667 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC22.31■■□□□ 1.16
LIMK1P53667 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC22.31■■□□□ 1.16
LIMK1P53667 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC22.31■■□□□ 1.16
LIMK1P53667 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC22.31■■□□□ 1.16
LIMK1P53667 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC22.31■■□□□ 1.16
LIMK1P53667 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
LIMK1P53667 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
LIMK1P53667 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LIMK1P53667 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
LIMK1P53667 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC22.3■■□□□ 1.16
LIMK1P53667 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC22.3■■□□□ 1.16
LIMK1P53667 TERF1P2-201ENST00000583350 1212 ntBASIC22.3■■□□□ 1.16
LIMK1P53667 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC22.3■■□□□ 1.16
LIMK1P53667 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.3■■□□□ 1.16
LIMK1P53667 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LIMK1P53667 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LIMK1P53667 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
LIMK1P53667 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
LIMK1P53667 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC22.29■■□□□ 1.16
LIMK1P53667 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LIMK1P53667 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
LIMK1P53667 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
LIMK1P53667 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
LIMK1P53667 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.29■■□□□ 1.16
LIMK1P53667 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
LIMK1P53667 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC22.29■■□□□ 1.16
LIMK1P53667 IGHV3-19-201ENST00000521488 291 ntBASIC22.29■■□□□ 1.16
LIMK1P53667 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC22.29■■□□□ 1.16
LIMK1P53667 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
LIMK1P53667 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC22.29■■□□□ 1.16
LIMK1P53667 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
LIMK1P53667 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC22.28■■□□□ 1.16
LIMK1P53667 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
LIMK1P53667 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC22.28■■□□□ 1.16
LIMK1P53667 AC092803.2-201ENST00000564287 1899 ntBASIC22.28■■□□□ 1.16
LIMK1P53667 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
LIMK1P53667 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
LIMK1P53667 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LIMK1P53667 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC22.28■■□□□ 1.16
LIMK1P53667 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
LIMK1P53667 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
LIMK1P53667 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC22.28■■□□□ 1.16
LIMK1P53667 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.28■■□□□ 1.16
LIMK1P53667 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
LIMK1P53667 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
LIMK1P53667 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.28■■□□□ 1.16
LIMK1P53667 LINC02228-203ENST00000641970 1355 ntBASIC22.27■■□□□ 1.16
LIMK1P53667 AC131274.2-201ENST00000580697 1507 ntBASIC22.27■■□□□ 1.16
LIMK1P53667 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
LIMK1P53667 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC22.27■■□□□ 1.16
LIMK1P53667 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
LIMK1P53667 AC080038.1-201ENST00000611274 1154 ntBASIC22.27■■□□□ 1.16
LIMK1P53667 MIR6084-201ENST00000622012 110 ntBASIC22.27■■□□□ 1.16
LIMK1P53667 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
LIMK1P53667 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.26■■□□□ 1.15
LIMK1P53667 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
LIMK1P53667 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22.26■■□□□ 1.15
LIMK1P53667 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
LIMK1P53667 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC22.26■■□□□ 1.15
LIMK1P53667 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LIMK1P53667 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
LIMK1P53667 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.26■■□□□ 1.15
LIMK1P53667 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
LIMK1P53667 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.26■■□□□ 1.15
LIMK1P53667 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC22.25■■□□□ 1.15
LIMK1P53667 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
LIMK1P53667 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
LIMK1P53667 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC22.25■■□□□ 1.15
LIMK1P53667 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC22.25■■□□□ 1.15
LIMK1P53667 RAP2CP1-201ENST00000605103 478 ntBASIC22.25■■□□□ 1.15
LIMK1P53667 TMEM191A-211ENST00000637163 1067 ntBASIC22.25■■□□□ 1.15
LIMK1P53667 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
LIMK1P53667 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
LIMK1P53667 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
LIMK1P53667 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.24■■□□□ 1.15
LIMK1P53667 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
LIMK1P53667 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22.24■■□□□ 1.15
LIMK1P53667 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC22.24■■□□□ 1.15
LIMK1P53667 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LIMK1P53667 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
LIMK1P53667 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC22.24■■□□□ 1.15
LIMK1P53667 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC22.24■■□□□ 1.15
LIMK1P53667 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.24■■□□□ 1.15
LIMK1P53667 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
LIMK1P53667 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC22.24■■□□□ 1.15
LIMK1P53667 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
LIMK1P53667 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC22.24■■□□□ 1.15
LIMK1P53667 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.24■■□□□ 1.15
LIMK1P53667 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC22.23■■□□□ 1.15
LIMK1P53667 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC22.23■■□□□ 1.15
LIMK1P53667 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC22.23■■□□□ 1.15
LIMK1P53667 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC22.23■■□□□ 1.15
LIMK1P53667 GXYLT1P5-201ENST00000614548 1189 ntBASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms