Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HNF4AP41235 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HNF4AP41235 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HNF4AP41235 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HNF4AP41235 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
HNF4AP41235 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HNF4AP41235 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
HNF4AP41235 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.77■■□□□ 1.08
HNF4AP41235 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.77■■□□□ 1.08
HNF4AP41235 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HNF4AP41235 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.77■■□□□ 1.08
HNF4AP41235 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
HNF4AP41235 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HNF4AP41235 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
HNF4AP41235 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.76■■□□□ 1.07
HNF4AP41235 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.76■■□□□ 1.07
HNF4AP41235 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HNF4AP41235 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HNF4AP41235 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HNF4AP41235 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HNF4AP41235 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.76■■□□□ 1.07
HNF4AP41235 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.76■■□□□ 1.07
HNF4AP41235 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.76■■□□□ 1.07
HNF4AP41235 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.76■■□□□ 1.07
HNF4AP41235 AC010997.5-201ENST00000609182 354 ntBASIC21.76■■□□□ 1.07
HNF4AP41235 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.76■■□□□ 1.07
HNF4AP41235 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HNF4AP41235 DUSP8P3-201ENST00000399571 1760 ntBASIC21.76■■□□□ 1.07
HNF4AP41235 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HNF4AP41235 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.76■■□□□ 1.07
HNF4AP41235 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.76■■□□□ 1.07
HNF4AP41235 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.75■■□□□ 1.07
HNF4AP41235 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HNF4AP41235 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.75■■□□□ 1.07
HNF4AP41235 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HNF4AP41235 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.75■■□□□ 1.07
HNF4AP41235 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.75■■□□□ 1.07
HNF4AP41235 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.75■■□□□ 1.07
HNF4AP41235 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HNF4AP41235 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HNF4AP41235 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HNF4AP41235 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
HNF4AP41235 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HNF4AP41235 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.74■■□□□ 1.07
HNF4AP41235 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HNF4AP41235 AC133561.1-201ENST00000568600 2415 ntBASIC21.74■■□□□ 1.07
HNF4AP41235 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HNF4AP41235 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HNF4AP41235 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
HNF4AP41235 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
HNF4AP41235 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
HNF4AP41235 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
HNF4AP41235 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.73■■□□□ 1.07
HNF4AP41235 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
HNF4AP41235 AC005703.6-201ENST00000623265 1329 ntBASIC21.73■■□□□ 1.07
HNF4AP41235 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HNF4AP41235 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HNF4AP41235 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
HNF4AP41235 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HNF4AP41235 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HNF4AP41235 KRT16P3-201ENST00000439127 1283 ntBASIC21.72■■□□□ 1.07
HNF4AP41235 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
HNF4AP41235 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.72■■□□□ 1.07
HNF4AP41235 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.72■■□□□ 1.07
HNF4AP41235 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
HNF4AP41235 AC068473.5-201ENST00000616428 2072 ntBASIC21.71■■□□□ 1.07
HNF4AP41235 AC012676.1-201ENST00000574705 1949 ntBASIC21.71■■□□□ 1.07
HNF4AP41235 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HNF4AP41235 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HNF4AP41235 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.71■■□□□ 1.07
HNF4AP41235 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.71■■□□□ 1.07
HNF4AP41235 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.71■■□□□ 1.07
HNF4AP41235 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.71■■□□□ 1.07
HNF4AP41235 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HNF4AP41235 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HNF4AP41235 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HNF4AP41235 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
HNF4AP41235 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
HNF4AP41235 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HNF4AP41235 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
HNF4AP41235 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HNF4AP41235 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HNF4AP41235 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.7■■□□□ 1.06
HNF4AP41235 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.7■■□□□ 1.06
HNF4AP41235 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.7■■□□□ 1.06
HNF4AP41235 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.7■■□□□ 1.06
HNF4AP41235 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.7■■□□□ 1.06
HNF4AP41235 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.7■■□□□ 1.06
HNF4AP41235 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
HNF4AP41235 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HNF4AP41235 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.69■■□□□ 1.06
HNF4AP41235 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HNF4AP41235 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.69■■□□□ 1.06
HNF4AP41235 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HNF4AP41235 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HNF4AP41235 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.69■■□□□ 1.06
HNF4AP41235 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
HNF4AP41235 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
HNF4AP41235 AC079630.1-202ENST00000618127 1840 ntBASIC21.69■■□□□ 1.06
HNF4AP41235 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms