Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 C17orf82-201ENST00000623772 1530 ntBASIC18.98■□□□□ 0.63
USF1P22415 LTK-203ENST00000453182 2412 ntTSL 2 BASIC18.98■□□□□ 0.63
USF1P22415 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
USF1P22415 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.97■□□□□ 0.63
USF1P22415 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.97■□□□□ 0.63
USF1P22415 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC18.97■□□□□ 0.63
USF1P22415 AC099791.1-201ENST00000416440 715 ntBASIC18.97■□□□□ 0.63
USF1P22415 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.97■□□□□ 0.63
USF1P22415 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USF1P22415 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
USF1P22415 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USF1P22415 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC18.97■□□□□ 0.63
USF1P22415 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
USF1P22415 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
USF1P22415 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18.96■□□□□ 0.63
USF1P22415 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
USF1P22415 IRS3P-201ENST00000223076 1006 ntBASIC18.96■□□□□ 0.63
USF1P22415 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC18.96■□□□□ 0.63
USF1P22415 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC18.96■□□□□ 0.63
USF1P22415 AC136469.2-201ENST00000623944 1028 ntBASIC18.96■□□□□ 0.63
USF1P22415 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.96■□□□□ 0.63
USF1P22415 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USF1P22415 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
USF1P22415 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USF1P22415 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USF1P22415 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USF1P22415 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USF1P22415 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USF1P22415 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USF1P22415 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
USF1P22415 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
USF1P22415 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.95■□□□□ 0.62
USF1P22415 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.95■□□□□ 0.62
USF1P22415 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.95■□□□□ 0.62
USF1P22415 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USF1P22415 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
USF1P22415 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
USF1P22415 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USF1P22415 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF1P22415 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF1P22415 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF1P22415 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USF1P22415 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.94■□□□□ 0.62
USF1P22415 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF1P22415 AC009086.3-201ENST00000623486 1008 ntBASIC18.94■□□□□ 0.62
USF1P22415 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF1P22415 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
USF1P22415 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
USF1P22415 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.94■□□□□ 0.62
USF1P22415 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF1P22415 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
USF1P22415 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USF1P22415 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USF1P22415 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USF1P22415 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC18.93■□□□□ 0.62
USF1P22415 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
USF1P22415 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USF1P22415 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
USF1P22415 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
USF1P22415 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USF1P22415 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USF1P22415 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USF1P22415 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.93■□□□□ 0.62
USF1P22415 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.93■□□□□ 0.62
USF1P22415 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.93■□□□□ 0.62
USF1P22415 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC18.93■□□□□ 0.62
USF1P22415 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC18.93■□□□□ 0.62
USF1P22415 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
USF1P22415 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC18.93■□□□□ 0.62
USF1P22415 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USF1P22415 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USF1P22415 AL161729.1-201ENST00000604104 1402 ntBASIC18.92■□□□□ 0.62
USF1P22415 PREB-202ENST00000406567 1910 ntTSL 5 BASIC18.92■□□□□ 0.62
USF1P22415 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USF1P22415 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USF1P22415 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USF1P22415 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.92■□□□□ 0.62
USF1P22415 AC087623.3-201ENST00000607047 1098 ntBASIC18.92■□□□□ 0.62
USF1P22415 AC233992.3-201ENST00000607491 485 ntBASIC18.92■□□□□ 0.62
USF1P22415 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
USF1P22415 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USF1P22415 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
USF1P22415 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USF1P22415 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USF1P22415 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USF1P22415 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USF1P22415 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USF1P22415 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
USF1P22415 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USF1P22415 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USF1P22415 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC18.91■□□□□ 0.62
USF1P22415 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USF1P22415 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USF1P22415 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC18.9■□□□□ 0.62
USF1P22415 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USF1P22415 BX842568.3-201ENST00000418104 571 ntBASIC18.9■□□□□ 0.62
USF1P22415 AC006455.2-201ENST00000429931 906 ntBASIC18.9■□□□□ 0.62
USF1P22415 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.9■□□□□ 0.62
USF1P22415 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.9■□□□□ 0.62
USF1P22415 MIR3181-201ENST00000578512 73 ntBASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms