Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXD4P09016 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.32■□□□□ 0.84
HOXD4P09016 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HOXD4P09016 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXD4P09016 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HOXD4P09016 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXD4P09016 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HOXD4P09016 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.31■□□□□ 0.84
HOXD4P09016 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.31■□□□□ 0.84
HOXD4P09016 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.31■□□□□ 0.84
HOXD4P09016 AC099791.2-201ENST00000605725 427 ntBASIC20.31■□□□□ 0.84
HOXD4P09016 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.31■□□□□ 0.84
HOXD4P09016 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.31■□□□□ 0.84
HOXD4P09016 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HOXD4P09016 C17orf82-201ENST00000623772 1530 ntBASIC20.31■□□□□ 0.84
HOXD4P09016 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HOXD4P09016 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.31■□□□□ 0.84
HOXD4P09016 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HOXD4P09016 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXD4P09016 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXD4P09016 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXD4P09016 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXD4P09016 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HOXD4P09016 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
HOXD4P09016 MIR5787-201ENST00000611784 55 ntBASIC20.3■□□□□ 0.84
HOXD4P09016 AL136967.2-201ENST00000623968 743 ntBASIC20.3■□□□□ 0.84
HOXD4P09016 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HOXD4P09016 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HOXD4P09016 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
HOXD4P09016 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXD4P09016 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.29■□□□□ 0.84
HOXD4P09016 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
HOXD4P09016 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HOXD4P09016 AC091305.1-201ENST00000479476 895 ntBASIC20.29■□□□□ 0.84
HOXD4P09016 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.29■□□□□ 0.84
HOXD4P09016 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.29■□□□□ 0.84
HOXD4P09016 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.29■□□□□ 0.84
HOXD4P09016 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
HOXD4P09016 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXD4P09016 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXD4P09016 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXD4P09016 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
HOXD4P09016 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HOXD4P09016 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXD4P09016 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXD4P09016 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXD4P09016 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXD4P09016 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.28■□□□□ 0.84
HOXD4P09016 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXD4P09016 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXD4P09016 SERBP1P1-201ENST00000396021 1160 ntBASIC20.28■□□□□ 0.84
HOXD4P09016 MIR939-201ENST00000401314 82 ntBASIC20.28■□□□□ 0.84
HOXD4P09016 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXD4P09016 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.28■□□□□ 0.84
HOXD4P09016 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
HOXD4P09016 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
HOXD4P09016 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
HOXD4P09016 AL024507.2-201ENST00000606070 2574 ntBASIC20.28■□□□□ 0.84
HOXD4P09016 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXD4P09016 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HOXD4P09016 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXD4P09016 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXD4P09016 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXD4P09016 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HOXD4P09016 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.27■□□□□ 0.84
HOXD4P09016 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXD4P09016 AC104564.3-201ENST00000582367 638 ntBASIC20.27■□□□□ 0.84
HOXD4P09016 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXD4P09016 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXD4P09016 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.27■□□□□ 0.83
HOXD4P09016 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
HOXD4P09016 AP003733.4-201ENST00000623785 1697 ntBASIC20.26■□□□□ 0.83
HOXD4P09016 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXD4P09016 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXD4P09016 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
HOXD4P09016 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXD4P09016 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXD4P09016 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
HOXD4P09016 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXD4P09016 AF213884.3-201ENST00000563833 479 ntBASIC20.26■□□□□ 0.83
HOXD4P09016 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXD4P09016 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXD4P09016 HLA-L-211ENST00000482052 1765 ntBASIC20.26■□□□□ 0.83
HOXD4P09016 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXD4P09016 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXD4P09016 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXD4P09016 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXD4P09016 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXD4P09016 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXD4P09016 RASA4CP-201ENST00000424092 1398 ntBASIC20.25■□□□□ 0.83
HOXD4P09016 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC20.25■□□□□ 0.83
HOXD4P09016 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXD4P09016 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXD4P09016 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXD4P09016 AC105265.2-201ENST00000467189 838 ntBASIC20.25■□□□□ 0.83
HOXD4P09016 MIR4767-201ENST00000582827 78 ntBASIC20.25■□□□□ 0.83
HOXD4P09016 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXD4P09016 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXD4P09016 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.25■□□□□ 0.83
HOXD4P09016 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms