Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 AC020928.2-201ENST00000588717 2197 ntBASIC35.52■■■■□ 3.28
PCF11O94913 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.28
PCF11O94913 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC35.51■■■■□ 3.28
PCF11O94913 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC35.51■■■■□ 3.28
PCF11O94913 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC35.51■■■■□ 3.28
PCF11O94913 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC35.51■■■■□ 3.28
PCF11O94913 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC35.51■■■■□ 3.28
PCF11O94913 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC35.51■■■■□ 3.28
PCF11O94913 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.27
PCF11O94913 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC35.51■■■■□ 3.27
PCF11O94913 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC35.51■■■■□ 3.27
PCF11O94913 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC35.51■■■■□ 3.27
PCF11O94913 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC35.51■■■■□ 3.27
PCF11O94913 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.27
PCF11O94913 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
PCF11O94913 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC35.5■■■■□ 3.27
PCF11O94913 EED-207ENST00000528180 1745 ntTSL 5 BASIC35.5■■■■□ 3.27
PCF11O94913 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC35.5■■■■□ 3.27
PCF11O94913 MPST-208ENST00000628507 698 ntTSL 5 BASIC35.5■■■■□ 3.27
PCF11O94913 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC35.49■■■■□ 3.27
PCF11O94913 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC35.49■■■■□ 3.27
PCF11O94913 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
PCF11O94913 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC35.49■■■■□ 3.27
PCF11O94913 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC35.49■■■■□ 3.27
PCF11O94913 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC35.48■■■■□ 3.27
PCF11O94913 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
PCF11O94913 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
PCF11O94913 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
PCF11O94913 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC35.48■■■■□ 3.27
PCF11O94913 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC35.48■■■■□ 3.27
PCF11O94913 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC35.48■■■■□ 3.27
PCF11O94913 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC35.48■■■■□ 3.27
PCF11O94913 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC35.47■■■■□ 3.27
PCF11O94913 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC35.47■■■■□ 3.27
PCF11O94913 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC35.47■■■■□ 3.27
PCF11O94913 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC35.47■■■■□ 3.27
PCF11O94913 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC35.47■■■■□ 3.27
PCF11O94913 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC35.47■■■■□ 3.27
PCF11O94913 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
PCF11O94913 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC35.47■■■■□ 3.27
PCF11O94913 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC35.47■■■■□ 3.27
PCF11O94913 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC35.47■■■■□ 3.27
PCF11O94913 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
PCF11O94913 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
PCF11O94913 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC35.46■■■■□ 3.27
PCF11O94913 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC35.46■■■■□ 3.27
PCF11O94913 AL031602.1-201ENST00000633169 911 ntBASIC35.46■■■■□ 3.27
PCF11O94913 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC35.46■■■■□ 3.27
PCF11O94913 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC35.45■■■■□ 3.27
PCF11O94913 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
PCF11O94913 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC35.45■■■■□ 3.27
PCF11O94913 JTB-203ENST00000368589 1216 ntTSL 2 BASIC35.45■■■■□ 3.27
PCF11O94913 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC35.45■■■■□ 3.27
PCF11O94913 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC35.45■■■■□ 3.27
PCF11O94913 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC35.45■■■■□ 3.27
PCF11O94913 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC35.44■■■■□ 3.26
PCF11O94913 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC35.44■■■■□ 3.26
PCF11O94913 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC35.44■■■■□ 3.26
PCF11O94913 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
PCF11O94913 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
PCF11O94913 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
PCF11O94913 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
PCF11O94913 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC35.43■■■■□ 3.26
PCF11O94913 IRS3P-201ENST00000223076 1006 ntBASIC35.42■■■■□ 3.26
PCF11O94913 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
PCF11O94913 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC35.42■■■■□ 3.26
PCF11O94913 GRAMD4P2-201ENST00000423297 1097 ntBASIC35.42■■■■□ 3.26
PCF11O94913 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC35.42■■■■□ 3.26
PCF11O94913 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC35.42■■■■□ 3.26
PCF11O94913 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
PCF11O94913 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC35.42■■■■□ 3.26
PCF11O94913 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC35.42■■■■□ 3.26
PCF11O94913 AC010525.1-201ENST00000585559 441 ntBASIC35.42■■■■□ 3.26
PCF11O94913 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
PCF11O94913 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
PCF11O94913 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
PCF11O94913 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
PCF11O94913 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
PCF11O94913 HACD1-201ENST00000326961 773 ntTSL 2 BASIC35.41■■■■□ 3.26
PCF11O94913 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC35.41■■■■□ 3.26
PCF11O94913 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC35.4■■■■□ 3.26
PCF11O94913 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC35.4■■■■□ 3.26
PCF11O94913 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC35.4■■■■□ 3.26
PCF11O94913 IGHV3-19-201ENST00000521488 291 ntBASIC35.4■■■■□ 3.26
PCF11O94913 AL499627.2-201ENST00000606283 725 ntBASIC35.4■■■■□ 3.26
PCF11O94913 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC35.4■■■■□ 3.26
PCF11O94913 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC35.4■■■■□ 3.26
PCF11O94913 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
PCF11O94913 OR2I1P-207ENST00000453522 948 ntBASIC35.39■■■■□ 3.26
PCF11O94913 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
PCF11O94913 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
PCF11O94913 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
PCF11O94913 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC35.39■■■■□ 3.26
PCF11O94913 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC35.39■■■■□ 3.26
PCF11O94913 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
PCF11O94913 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
PCF11O94913 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC35.38■■■■□ 3.25
PCF11O94913 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC35.38■■■■□ 3.25
PCF11O94913 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC35.38■■■■□ 3.25
PCF11O94913 TSPY26P-201ENST00000476365 1326 ntBASIC35.38■■■■□ 3.25
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms