Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 BID-214ENST00000617586 542 ntTSL 5 BASIC32.34■■■□□ 2.77
NPHP4O75161 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC32.34■■■□□ 2.77
NPHP4O75161 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC32.34■■■□□ 2.77
NPHP4O75161 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
NPHP4O75161 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
NPHP4O75161 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC32.34■■■□□ 2.77
NPHP4O75161 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
NPHP4O75161 CD99P1-205ENST00000527459 561 ntBASIC32.34■■■□□ 2.77
NPHP4O75161 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
NPHP4O75161 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC32.33■■■□□ 2.77
NPHP4O75161 USF2-207ENST00000595068 1612 ntTSL 5 BASIC32.33■■■□□ 2.77
NPHP4O75161 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
NPHP4O75161 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC32.33■■■□□ 2.77
NPHP4O75161 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC32.33■■■□□ 2.77
NPHP4O75161 AC091060.1-201ENST00000623524 1766 ntBASIC32.32■■■□□ 2.76
NPHP4O75161 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC32.32■■■□□ 2.76
NPHP4O75161 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC32.32■■■□□ 2.76
NPHP4O75161 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
NPHP4O75161 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC32.31■■■□□ 2.76
NPHP4O75161 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC32.31■■■□□ 2.76
NPHP4O75161 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC32.31■■■□□ 2.76
NPHP4O75161 AL499627.2-201ENST00000606283 725 ntBASIC32.31■■■□□ 2.76
NPHP4O75161 WWOX-218ENST00000627394 894 ntTSL 5 BASIC32.31■■■□□ 2.76
NPHP4O75161 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
NPHP4O75161 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
NPHP4O75161 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC32.3■■■□□ 2.76
NPHP4O75161 AC133637.1-201ENST00000624115 1537 ntBASIC32.3■■■□□ 2.76
NPHP4O75161 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC32.3■■■□□ 2.76
NPHP4O75161 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC32.3■■■□□ 2.76
NPHP4O75161 OR2I1P-207ENST00000453522 948 ntBASIC32.3■■■□□ 2.76
NPHP4O75161 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
NPHP4O75161 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC32.3■■■□□ 2.76
NPHP4O75161 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC32.3■■■□□ 2.76
NPHP4O75161 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
NPHP4O75161 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC32.29■■■□□ 2.76
NPHP4O75161 MIR663A-201ENST00000385250 93 ntBASIC32.29■■■□□ 2.76
NPHP4O75161 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC32.29■■■□□ 2.76
NPHP4O75161 AC010501.1-201ENST00000606270 1962 ntBASIC32.29■■■□□ 2.76
NPHP4O75161 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
NPHP4O75161 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC32.28■■■□□ 2.76
NPHP4O75161 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
NPHP4O75161 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC32.28■■■□□ 2.76
NPHP4O75161 MIR6089-201ENST00000616698 64 ntBASIC32.28■■■□□ 2.76
NPHP4O75161 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
NPHP4O75161 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
NPHP4O75161 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC32.28■■■□□ 2.76
NPHP4O75161 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
NPHP4O75161 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC32.27■■■□□ 2.76
NPHP4O75161 TSPY20P-201ENST00000450910 630 ntBASIC32.27■■■□□ 2.76
NPHP4O75161 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC32.27■■■□□ 2.76
NPHP4O75161 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC32.27■■■□□ 2.76
NPHP4O75161 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
NPHP4O75161 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC32.27■■■□□ 2.76
NPHP4O75161 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC32.26■■■□□ 2.76
NPHP4O75161 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC32.26■■■□□ 2.76
NPHP4O75161 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC32.26■■■□□ 2.76
NPHP4O75161 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
NPHP4O75161 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
NPHP4O75161 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC32.26■■■□□ 2.75
NPHP4O75161 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC32.25■■■□□ 2.75
NPHP4O75161 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC32.25■■■□□ 2.75
NPHP4O75161 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC32.25■■■□□ 2.75
NPHP4O75161 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC32.25■■■□□ 2.75
NPHP4O75161 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC32.25■■■□□ 2.75
NPHP4O75161 TPRG1LP1-201ENST00000598702 760 ntBASIC32.25■■■□□ 2.75
NPHP4O75161 AC105233.4-201ENST00000642045 216 ntBASIC32.25■■■□□ 2.75
NPHP4O75161 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC32.24■■■□□ 2.75
NPHP4O75161 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC32.24■■■□□ 2.75
NPHP4O75161 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC32.24■■■□□ 2.75
NPHP4O75161 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC32.24■■■□□ 2.75
NPHP4O75161 APTR-205ENST00000447009 902 ntTSL 2 BASIC32.24■■■□□ 2.75
NPHP4O75161 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC32.23■■■□□ 2.75
NPHP4O75161 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC32.23■■■□□ 2.75
NPHP4O75161 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC32.23■■■□□ 2.75
NPHP4O75161 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC32.23■■■□□ 2.75
NPHP4O75161 WT1-AS_3.1-201ENST00000613262 234 ntBASIC32.23■■■□□ 2.75
NPHP4O75161 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC32.23■■■□□ 2.75
NPHP4O75161 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
NPHP4O75161 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
NPHP4O75161 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC32.23■■■□□ 2.75
NPHP4O75161 SHD-204ENST00000599689 1729 ntTSL 5 BASIC32.23■■■□□ 2.75
NPHP4O75161 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC32.23■■■□□ 2.75
NPHP4O75161 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC32.22■■■□□ 2.75
NPHP4O75161 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC32.22■■■□□ 2.75
NPHP4O75161 AP004607.4-201ENST00000530158 1459 ntBASIC32.22■■■□□ 2.75
NPHP4O75161 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
NPHP4O75161 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
NPHP4O75161 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC32.22■■■□□ 2.75
NPHP4O75161 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC32.22■■■□□ 2.75
NPHP4O75161 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC32.22■■■□□ 2.75
NPHP4O75161 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
NPHP4O75161 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC32.22■■■□□ 2.75
NPHP4O75161 AC004854.2-201ENST00000608450 1441 ntBASIC32.21■■■□□ 2.75
NPHP4O75161 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC32.21■■■□□ 2.75
NPHP4O75161 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
NPHP4O75161 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC32.21■■■□□ 2.75
NPHP4O75161 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC32.21■■■□□ 2.75
NPHP4O75161 AC142086.2-201ENST00000569753 217 ntBASIC32.21■■■□□ 2.75
NPHP4O75161 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC32.21■■■□□ 2.75
NPHP4O75161 GAMT-205ENST00000640762 751 ntTSL 5 BASIC32.21■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms