Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AC012645.4-201ENST00000610691 1061 ntBASIC16.12■□□□□ 0.17
ERCC4Q92889 MIR6720-201ENST00000611664 98 ntBASIC16.12■□□□□ 0.17
ERCC4Q92889 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.12■□□□□ 0.17
ERCC4Q92889 OS9-218ENST00000551035 2246 ntTSL 2 BASIC16.12■□□□□ 0.17
ERCC4Q92889 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC16.12■□□□□ 0.17
ERCC4Q92889 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC16.12■□□□□ 0.17
ERCC4Q92889 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
ERCC4Q92889 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC4Q92889 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
ERCC4Q92889 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 F2-205ENST00000530231 1849 ntTSL 5 BASIC16.11■□□□□ 0.17
ERCC4Q92889 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.11■□□□□ 0.17
ERCC4Q92889 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.11■□□□□ 0.17
ERCC4Q92889 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.11■□□□□ 0.17
ERCC4Q92889 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC16.11■□□□□ 0.17
ERCC4Q92889 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
ERCC4Q92889 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.11■□□□□ 0.17
ERCC4Q92889 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.11■□□□□ 0.17
ERCC4Q92889 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.11■□□□□ 0.17
ERCC4Q92889 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.11■□□□□ 0.17
ERCC4Q92889 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
ERCC4Q92889 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.11■□□□□ 0.17
ERCC4Q92889 HNRNPA1P48-202ENST00000565308 961 ntBASIC16.11■□□□□ 0.17
ERCC4Q92889 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 AHCYP2-201ENST00000430630 1300 ntBASIC16.11■□□□□ 0.17
ERCC4Q92889 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC16.11■□□□□ 0.17
ERCC4Q92889 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
ERCC4Q92889 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC4Q92889 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC16.11■□□□□ 0.17
ERCC4Q92889 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC16.1■□□□□ 0.17
ERCC4Q92889 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
ERCC4Q92889 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC16.1■□□□□ 0.17
ERCC4Q92889 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC16.1■□□□□ 0.17
ERCC4Q92889 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC16.1■□□□□ 0.17
ERCC4Q92889 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.1■□□□□ 0.17
ERCC4Q92889 AL645937.6-201ENST00000641122 3727 ntBASIC16.1■□□□□ 0.17
ERCC4Q92889 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
ERCC4Q92889 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.1■□□□□ 0.17
ERCC4Q92889 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC16.1■□□□□ 0.17
ERCC4Q92889 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC16.1■□□□□ 0.17
ERCC4Q92889 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.1■□□□□ 0.17
ERCC4Q92889 AC026954.1-201ENST00000429771 1293 ntBASIC16.1■□□□□ 0.17
ERCC4Q92889 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC16.1■□□□□ 0.17
ERCC4Q92889 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC16.1■□□□□ 0.17
ERCC4Q92889 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 DUX4L46-201ENST00000566845 751 ntBASIC16.1■□□□□ 0.17
ERCC4Q92889 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.1■□□□□ 0.17
ERCC4Q92889 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC16.1■□□□□ 0.17
ERCC4Q92889 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.1■□□□□ 0.17
ERCC4Q92889 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.1■□□□□ 0.17
ERCC4Q92889 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
ERCC4Q92889 TNN-202ENST00000621086 4234 ntTSL 5 BASIC16.1■□□□□ 0.17
ERCC4Q92889 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC4Q92889 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC16.1■□□□□ 0.17
ERCC4Q92889 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms