Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
VPS13CQ709C8 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
VPS13CQ709C8 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC11.33□□□□□ -0.6
VPS13CQ709C8 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
VPS13CQ709C8 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
VPS13CQ709C8 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
VPS13CQ709C8 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
VPS13CQ709C8 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
VPS13CQ709C8 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
VPS13CQ709C8 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
VPS13CQ709C8 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
VPS13CQ709C8 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
VPS13CQ709C8 AC004910.1-201ENST00000433493 787 ntBASIC11.33□□□□□ -0.6
VPS13CQ709C8 RN7SL838P-201ENST00000481676 295 ntBASIC11.33□□□□□ -0.6
VPS13CQ709C8 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC11.33□□□□□ -0.6
VPS13CQ709C8 AL031768.1-201ENST00000606542 701 ntBASIC11.33□□□□□ -0.6
VPS13CQ709C8 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC11.33□□□□□ -0.6
VPS13CQ709C8 KRT8P42-201ENST00000405771 1399 ntBASIC11.33□□□□□ -0.6
VPS13CQ709C8 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
VPS13CQ709C8 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
VPS13CQ709C8 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
VPS13CQ709C8 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
VPS13CQ709C8 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
VPS13CQ709C8 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 FAM25A-201ENST00000343959 345 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 SOD1-202ENST00000389995 865 ntTSL 3 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 PSMB8-AS1-206ENST00000458296 958 ntTSL 3 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 GOLGA8G-203ENST00000525590 2009 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 GOLGA8F-202ENST00000532622 2009 ntAPPRIS P5 TSL 5 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 MIR1307-201ENST00000408840 149 ntBASIC11.32□□□□□ -0.6
VPS13CQ709C8 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 PGK1P2-201ENST00000431702 1214 ntBASIC11.32□□□□□ -0.6
VPS13CQ709C8 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 HNRNPA1P56-201ENST00000505767 954 ntBASIC11.32□□□□□ -0.6
VPS13CQ709C8 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 ALG6-202ENST00000371108 3371 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 RNA5SP84-201ENST00000364740 107 ntBASIC11.32□□□□□ -0.6
VPS13CQ709C8 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 TCEA3-204ENST00000461794 713 ntTSL 3 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 COG6-212ENST00000630730 186 ntTSL 5 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
VPS13CQ709C8 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13CQ709C8 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13CQ709C8 AL121949.1-201ENST00000402043 968 ntBASIC11.31□□□□□ -0.6
VPS13CQ709C8 IQCF4-203ENST00000428561 420 ntBASIC11.31□□□□□ -0.6
VPS13CQ709C8 RBM14-205ENST00000443702 732 ntTSL 3 BASIC11.31□□□□□ -0.6
VPS13CQ709C8 AC079250.1-201ENST00000456046 531 ntBASIC11.31□□□□□ -0.6
VPS13CQ709C8 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13CQ709C8 HNRNPA1P72-201ENST00000529511 967 ntBASIC11.31□□□□□ -0.6
VPS13CQ709C8 FTH1-205ENST00000529631 507 ntTSL 4 BASIC11.31□□□□□ -0.6
VPS13CQ709C8 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
VPS13CQ709C8 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC11.31□□□□□ -0.6
VPS13CQ709C8 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13CQ709C8 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC11.31□□□□□ -0.6
VPS13CQ709C8 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC11.31□□□□□ -0.6
VPS13CQ709C8 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13CQ709C8 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13CQ709C8 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13CQ709C8 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13CQ709C8 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13CQ709C8 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13CQ709C8 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13CQ709C8 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13CQ709C8 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC11.31□□□□□ -0.6
VPS13CQ709C8 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13CQ709C8 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC11.31□□□□□ -0.6
VPS13CQ709C8 IQCF1-201ENST00000310914 695 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13CQ709C8 PPP1R2P10-201ENST00000393023 595 ntBASIC11.31□□□□□ -0.6
VPS13CQ709C8 AL022725.1-201ENST00000436283 369 ntTSL 2 BASIC11.31□□□□□ -0.6
VPS13CQ709C8 RN7SL794P-201ENST00000469816 280 ntBASIC11.31□□□□□ -0.6
VPS13CQ709C8 AC090152.1-202ENST00000518993 1079 ntTSL 3 BASIC11.31□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms