Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC130686.1-201ENST00000622936 2466 ntBASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 AC079336.7-201ENST00000623428 1078 ntBASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 GSN-209ENST00000449733 2702 ntTSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 AMT-232ENST00000636199 1546 ntTSL 5 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 LSS-211ENST00000522411 2523 ntTSL 2 BASIC11.9□□□□□ -0.5
PDLIM3Q53GG5 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC11.9□□□□□ -0.51
PDLIM3Q53GG5 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
PDLIM3Q53GG5 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC11.9□□□□□ -0.51
PDLIM3Q53GG5 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 INTS4P2-202ENST00000614726 2019 ntBASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 AL138725.1-201ENST00000407347 1314 ntBASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 AC134312.5-201ENST00000568031 1313 ntBASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 URGCP-201ENST00000336086 5658 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 MRVI1-216ENST00000547195 6155 ntTSL 2 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 MAPT-IT1-201ENST00000624111 3016 ntBASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 RPL13AP19-201ENST00000434320 584 ntBASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 PTPA-218ENST00000435132 618 ntTSL 2 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 AC120045.2-201ENST00000567334 178 ntBASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 MIR3147-201ENST00000577811 66 ntBASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 AC005357.2-202ENST00000590507 1060 ntBASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 AP001505.2-201ENST00000616815 443 ntBASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 HADH-202ENST00000403312 1752 ntTSL 5 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 SOGA3-207ENST00000481848 11464 ntAPPRIS P5 TSL 5 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 AL136172.1-201ENST00000598590 1394 ntBASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 AC090643.2-201ENST00000623442 2029 ntBASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 SRD5A1-201ENST00000274192 7132 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PDLIM3Q53GG5 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 CACNA1G-218ENST00000507510 7014 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 AC005562.1-201ENST00000583030 3219 ntBASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 AP2A2-202ENST00000448903 4575 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 CYP46A4P-201ENST00000414953 267 ntBASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 DEF8-202ENST00000418391 852 ntTSL 2 BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 EIF3FP3-201ENST00000434851 1086 ntBASIC11.88□□□□□ -0.51
PDLIM3Q53GG5 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms