Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBA52P62987 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBA52P62987 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.36□□□□□ -0.43
UBA52P62987 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
UBA52P62987 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBA52P62987 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBA52P62987 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBA52P62987 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBA52P62987 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
UBA52P62987 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC12.36□□□□□ -0.43
UBA52P62987 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBA52P62987 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBA52P62987 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
UBA52P62987 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBA52P62987 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
UBA52P62987 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 AL138799.1-201ENST00000448213 1675 ntBASIC12.35□□□□□ -0.43
UBA52P62987 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC12.35□□□□□ -0.43
UBA52P62987 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC12.35□□□□□ -0.43
UBA52P62987 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
UBA52P62987 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC12.35□□□□□ -0.43
UBA52P62987 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC12.35□□□□□ -0.43
UBA52P62987 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
UBA52P62987 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC12.35□□□□□ -0.43
UBA52P62987 AL590640.2-201ENST00000457038 527 ntBASIC12.35□□□□□ -0.43
UBA52P62987 GAPDHP40-201ENST00000505218 1006 ntBASIC12.35□□□□□ -0.43
UBA52P62987 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC12.35□□□□□ -0.43
UBA52P62987 SCARNA20.5-201ENST00000516991 142 ntBASIC12.35□□□□□ -0.43
UBA52P62987 ACR-203ENST00000529621 708 ntTSL 5 BASIC12.35□□□□□ -0.43
UBA52P62987 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
UBA52P62987 AP006547.1-201ENST00000563435 692 ntBASIC12.35□□□□□ -0.43
UBA52P62987 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
UBA52P62987 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC12.35□□□□□ -0.43
UBA52P62987 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC12.35□□□□□ -0.43
UBA52P62987 AC106872.11-201ENST00000605838 421 ntBASIC12.35□□□□□ -0.43
UBA52P62987 AL021578.1-201ENST00000613646 709 ntBASIC12.35□□□□□ -0.43
UBA52P62987 AC006453.4-201ENST00000636949 1252 ntBASIC12.35□□□□□ -0.43
UBA52P62987 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
UBA52P62987 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
UBA52P62987 HARS-202ENST00000415192 1401 ntTSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBA52P62987 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC12.35□□□□□ -0.43
UBA52P62987 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 MKRN5P-201ENST00000445263 1467 ntBASIC12.34□□□□□ -0.43
UBA52P62987 AC024075.2-201ENST00000598112 1473 ntBASIC12.34□□□□□ -0.43
UBA52P62987 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
UBA52P62987 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBA52P62987 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
UBA52P62987 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms