Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 TET3-201ENST00000305799 5174 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A2P12110 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A2P12110 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
COL6A2P12110 BOLA2P3-201ENST00000404566 256 ntBASIC14.03□□□□□ -0.16
COL6A2P12110 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC14.03□□□□□ -0.16
COL6A2P12110 POM121L10P-201ENST00000436994 1285 ntBASIC14.03□□□□□ -0.16
COL6A2P12110 OR2R1P-201ENST00000441404 914 ntBASIC14.03□□□□□ -0.16
COL6A2P12110 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC14.03□□□□□ -0.16
COL6A2P12110 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
COL6A2P12110 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 USB1-203ENST00000539737 1212 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A2P12110 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A2P12110 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC14.03□□□□□ -0.16
COL6A2P12110 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
COL6A2P12110 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 LINC00115-201ENST00000473798 1317 ntBASIC14.03□□□□□ -0.16
COL6A2P12110 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A2P12110 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A2P12110 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 DLX4-206ENST00000611342 1662 ntBASIC14.03□□□□□ -0.16
COL6A2P12110 AMT-256ENST00000638063 1783 ntTSL 5 BASIC14.03□□□□□ -0.16
COL6A2P12110 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
COL6A2P12110 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
COL6A2P12110 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
COL6A2P12110 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC14.03□□□□□ -0.16
COL6A2P12110 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
COL6A2P12110 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL6A2P12110 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
COL6A2P12110 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A2P12110 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A2P12110 AP002761.4-201ENST00000565433 3361 ntBASIC14.02□□□□□ -0.16
COL6A2P12110 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A2P12110 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC14.02□□□□□ -0.16
COL6A2P12110 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC14.02□□□□□ -0.16
COL6A2P12110 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
COL6A2P12110 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL6A2P12110 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
COL6A2P12110 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC14.02□□□□□ -0.16
COL6A2P12110 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.16
COL6A2P12110 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
COL6A2P12110 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
COL6A2P12110 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A2P12110 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC14.02□□□□□ -0.17
COL6A2P12110 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A2P12110 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A2P12110 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC14.02□□□□□ -0.17
COL6A2P12110 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A2P12110 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A2P12110 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.02□□□□□ -0.17
COL6A2P12110 XBP1P1-201ENST00000436573 652 ntBASIC14.02□□□□□ -0.17
COL6A2P12110 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC14.02□□□□□ -0.17
COL6A2P12110 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.02□□□□□ -0.17
COL6A2P12110 COX20P2-201ENST00000452636 358 ntBASIC14.02□□□□□ -0.17
COL6A2P12110 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC14.02□□□□□ -0.17
COL6A2P12110 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC14.02□□□□□ -0.17
COL6A2P12110 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A2P12110 AP000346.4-201ENST00000614827 381 ntBASIC14.02□□□□□ -0.17
COL6A2P12110 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC14.02□□□□□ -0.17
COL6A2P12110 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A2P12110 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A2P12110 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A2P12110 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
COL6A2P12110 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
COL6A2P12110 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A2P12110 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
COL6A2P12110 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A2P12110 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC14.02□□□□□ -0.17
COL6A2P12110 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A2P12110 AC131902.2-201ENST00000566892 2172 ntBASIC14.02□□□□□ -0.17
COL6A2P12110 AC004623.1-201ENST00000624592 2127 ntBASIC14.02□□□□□ -0.17
COL6A2P12110 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.17
COL6A2P12110 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL6A2P12110 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A2P12110 AC010970.1-201ENST00000445125 1848 ntBASIC14.01□□□□□ -0.17
COL6A2P12110 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A2P12110 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A2P12110 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.01□□□□□ -0.17
COL6A2P12110 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A2P12110 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A2P12110 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A2P12110 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
COL6A2P12110 AP002353.1-201ENST00000528257 1599 ntBASIC14.01□□□□□ -0.17
COL6A2P12110 AC011700.1-201ENST00000610409 2627 ntBASIC14.01□□□□□ -0.17
COL6A2P12110 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
COL6A2P12110 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A2P12110 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL6A2P12110 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC14.01□□□□□ -0.17
COL6A2P12110 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms