Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC073869.1-201ENST00000415574 2762 ntBASIC8.4□□□□□ -1.06
APOBP04114 ZNF582-201ENST00000301310 2824 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 ALLC-201ENST00000252505 1446 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC8.4□□□□□ -1.06
APOBP04114 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC8.4□□□□□ -1.06
APOBP04114 BPIFB1-201ENST00000253354 1727 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 ABCD3-201ENST00000315713 884 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC8.4□□□□□ -1.06
APOBP04114 JPT1-205ENST00000470924 663 ntTSL 5 BASIC8.4□□□□□ -1.06
APOBP04114 AP002852.2-202ENST00000523572 592 ntTSL 4 BASIC8.4□□□□□ -1.06
APOBP04114 AC133555.4-201ENST00000569081 152 ntBASIC8.4□□□□□ -1.06
APOBP04114 MDC1-209ENST00000613547 830 ntTSL 5 BASIC8.4□□□□□ -1.06
APOBP04114 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.06
APOBP04114 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
APOBP04114 PCTP-202ENST00000325214 1856 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC8.4□□□□□ -1.06
APOBP04114 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 AS3MT-202ENST00000615257 1723 ntTSL 5 BASIC8.4□□□□□ -1.07
APOBP04114 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 BX088651.4-202ENST00000428895 1479 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 AL590399.1-202ENST00000429818 1480 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 AL512625.1-202ENST00000476224 1480 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 PI4KAP2-201ENST00000360806 2080 ntBASIC8.4□□□□□ -1.07
APOBP04114 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 AC104640.1-201ENST00000562617 2109 ntBASIC8.4□□□□□ -1.07
APOBP04114 ANAPC15-201ENST00000227618 886 ntAPPRIS P3 TSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 SLC25A5-201ENST00000317881 1274 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 TEDDM2P-201ENST00000414169 786 ntBASIC8.4□□□□□ -1.07
APOBP04114 SNAP25-AS1-202ENST00000426491 804 ntTSL 5 BASIC8.4□□□□□ -1.07
APOBP04114 AC007312.1-201ENST00000427493 258 ntBASIC8.4□□□□□ -1.07
APOBP04114 LINC02344-201ENST00000443576 644 ntTSL 2 BASIC8.4□□□□□ -1.07
APOBP04114 TGFA-207ENST00000450929 950 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC8.4□□□□□ -1.07
APOBP04114 CACNA1C-AS1-203ENST00000544517 742 ntTSL 4 BASIC8.4□□□□□ -1.07
APOBP04114 EIF5A-207ENST00000572815 811 ntTSL 5 BASIC8.4□□□□□ -1.07
APOBP04114 AC136475.7-201ENST00000602949 592 ntBASIC8.4□□□□□ -1.07
APOBP04114 AL121992.3-201ENST00000606186 346 ntBASIC8.4□□□□□ -1.07
APOBP04114 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC8.4□□□□□ -1.07
APOBP04114 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC8.4□□□□□ -1.07
APOBP04114 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC8.4□□□□□ -1.07
APOBP04114 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 AC012358.2-201ENST00000430010 1434 ntBASIC8.4□□□□□ -1.07
APOBP04114 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
APOBP04114 AP000787.1-205ENST00000536683 1485 ntTSL 5 BASIC8.4□□□□□ -1.07
APOBP04114 IGHE-202ENST00000641420 1485 ntAPPRIS P5 BASIC8.4□□□□□ -1.07
APOBP04114 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
APOBP04114 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC8.39□□□□□ -1.07
APOBP04114 NME1-209ENST00000511355 1645 ntTSL 5 BASIC8.39□□□□□ -1.07
APOBP04114 C3orf36-201ENST00000408895 1668 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
APOBP04114 PIGB-202ENST00000539642 1668 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
APOBP04114 SMIM14-205ENST00000511809 830 ntTSL 2 BASIC8.39□□□□□ -1.07
APOBP04114 OR10V2P-201ENST00000525296 764 ntBASIC8.39□□□□□ -1.07
APOBP04114 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC8.39□□□□□ -1.07
APOBP04114 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC8.39□□□□□ -1.07
APOBP04114 MIR1587-201ENST00000583319 53 ntBASIC8.39□□□□□ -1.07
APOBP04114 AC108102.1-201ENST00000606528 548 ntTSL 3 BASIC8.39□□□□□ -1.07
APOBP04114 MED25-209ENST00000612791 881 ntTSL 5 BASIC8.39□□□□□ -1.07
APOBP04114 Metazoa_SRP.168-201ENST00000621608 264 ntBASIC8.39□□□□□ -1.07
APOBP04114 LINC02486-201ENST00000604157 3000 ntBASIC8.39□□□□□ -1.07
APOBP04114 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
APOBP04114 HPGD-204ENST00000504433 1910 ntTSL 2 BASIC8.39□□□□□ -1.07
APOBP04114 AC011239.2-201ENST00000624820 1489 ntBASIC8.39□□□□□ -1.07
APOBP04114 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
APOBP04114 SUCLG2-203ENST00000492795 1512 ntTSL 2 BASIC8.39□□□□□ -1.07
APOBP04114 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
APOBP04114 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
APOBP04114 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
APOBP04114 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC8.39□□□□□ -1.07
APOBP04114 MORN2-205ENST00000410014 750 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
APOBP04114 AL669831.4-201ENST00000447500 872 ntTSL 5 BASIC8.39□□□□□ -1.07
APOBP04114 AL132780.2-203ENST00000555294 589 ntTSL 4 BASIC8.39□□□□□ -1.07
APOBP04114 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC8.39□□□□□ -1.07
APOBP04114 AL390726.3-201ENST00000567428 635 ntTSL 5 BASIC8.39□□□□□ -1.07
APOBP04114 SARS2-211ENST00000598831 665 ntTSL 5 BASIC8.39□□□□□ -1.07
APOBP04114 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
APOBP04114 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC8.39□□□□□ -1.07
APOBP04114 RNF4-216ENST00000511859 1373 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
APOBP04114 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC8.39□□□□□ -1.07
APOBP04114 Z97653.2-201ENST00000623057 1418 ntBASIC8.39□□□□□ -1.07
APOBP04114 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
APOBP04114 NBEAP3-201ENST00000420638 1493 ntBASIC8.39□□□□□ -1.07
APOBP04114 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
APOBP04114 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC8.39□□□□□ -1.07
APOBP04114 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
APOBP04114 COCH-203ENST00000460581 2688 ntTSL 2 BASIC8.39□□□□□ -1.07
APOBP04114 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC8.39□□□□□ -1.07
APOBP04114 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
APOBP04114 COX4I2-201ENST00000376075 693 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms