Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 AC097359.2-201ENST00000604992 2389 ntBASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 GUSBP10-201ENST00000417412 665 ntBASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 AC097065.1-201ENST00000425737 517 ntBASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 ERP29P1-201ENST00000442902 706 ntBASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 AC004837.1-201ENST00000446267 564 ntBASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 ELP5-212ENST00000574255 671 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 RN7SL832P-201ENST00000607781 1756 ntBASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 AC011498.7-201ENST00000624986 2027 ntBASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 AC139749.1-202ENST00000617529 3139 ntBASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 AC015802.1-201ENST00000588104 1449 ntBASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 RN7SKP109-201ENST00000410592 316 ntBASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 AL161932.2-201ENST00000435436 679 ntBASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 RNA5SP417-201ENST00000516459 108 ntBASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 SKA2-205ENST00000580541 689 ntTSL 3 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 SIGLEC22P-201ENST00000599104 714 ntBASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 AC064801.2-201ENST00000625052 1303 ntBASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC3Q9BQI4 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms