Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC018638.5-201ENST00000450885 754 ntBASIC14.42□□□□□ -0.1
USP39Q53GS9 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC14.42□□□□□ -0.1
USP39Q53GS9 AC022447.6-201ENST00000515522 438 ntBASIC14.42□□□□□ -0.1
USP39Q53GS9 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 AC073592.2-201ENST00000623062 780 ntBASIC14.42□□□□□ -0.1
USP39Q53GS9 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC14.42□□□□□ -0.1
USP39Q53GS9 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
USP39Q53GS9 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.42□□□□□ -0.1
USP39Q53GS9 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
USP39Q53GS9 AC041040.2-201ENST00000622926 2899 ntBASIC14.42□□□□□ -0.1
USP39Q53GS9 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
USP39Q53GS9 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
USP39Q53GS9 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
USP39Q53GS9 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
USP39Q53GS9 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.41□□□□□ -0.1
USP39Q53GS9 AC126335.2-201ENST00000623362 4637 ntBASIC14.41□□□□□ -0.1
USP39Q53GS9 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
USP39Q53GS9 CICP4-201ENST00000447359 2812 ntBASIC14.41□□□□□ -0.1
USP39Q53GS9 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
USP39Q53GS9 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC14.41□□□□□ -0.1
USP39Q53GS9 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
USP39Q53GS9 AC098934.1-203ENST00000442868 1262 ntBASIC14.41□□□□□ -0.1
USP39Q53GS9 RPL35P9-201ENST00000446059 350 ntBASIC14.41□□□□□ -0.1
USP39Q53GS9 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC14.41□□□□□ -0.1
USP39Q53GS9 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 LINC00634-202ENST00000505157 222 ntBASIC14.41□□□□□ -0.1
USP39Q53GS9 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC14.41□□□□□ -0.1
USP39Q53GS9 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC14.41□□□□□ -0.1
USP39Q53GS9 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC14.41□□□□□ -0.1
USP39Q53GS9 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC14.41□□□□□ -0.1
USP39Q53GS9 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC14.41□□□□□ -0.1
USP39Q53GS9 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC14.41□□□□□ -0.1
USP39Q53GS9 AC005041.3-201ENST00000606287 649 ntBASIC14.41□□□□□ -0.1
USP39Q53GS9 AC021016.3-201ENST00000608367 477 ntBASIC14.41□□□□□ -0.1
USP39Q53GS9 AC007250.1-201ENST00000608934 338 ntBASIC14.41□□□□□ -0.1
USP39Q53GS9 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC14.41□□□□□ -0.1
USP39Q53GS9 FTX-216ENST00000638985 1367 ntTSL 5 BASIC14.41□□□□□ -0.1
USP39Q53GS9 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
USP39Q53GS9 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.41□□□□□ -0.1
USP39Q53GS9 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
USP39Q53GS9 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC14.41□□□□□ -0.1
USP39Q53GS9 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
USP39Q53GS9 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
USP39Q53GS9 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.41□□□□□ -0.1
USP39Q53GS9 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.41□□□□□ -0.1
USP39Q53GS9 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
USP39Q53GS9 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.41□□□□□ -0.1
USP39Q53GS9 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.41□□□□□ -0.1
USP39Q53GS9 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.41□□□□□ -0.1
USP39Q53GS9 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 AC006372.4-201ENST00000624122 1543 ntBASIC14.41□□□□□ -0.1
USP39Q53GS9 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP39Q53GS9 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 AC104581.4-201ENST00000623126 3052 ntBASIC14.4□□□□□ -0.1
USP39Q53GS9 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 AGGF1P1-201ENST00000509500 2073 ntBASIC14.4□□□□□ -0.1
USP39Q53GS9 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms