Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 PMEL-214ENST00000550447 901 ntTSL 3 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 NAMA-206ENST00000605377 509 ntTSL 5 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 AC138696.2-201ENST00000607376 223 ntBASIC13.69□□□□□ -0.22
COL28A1Q2UY09 AC002044.2-201ENST00000624910 970 ntBASIC13.69□□□□□ -0.22
COL28A1Q2UY09 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL28A1Q2UY09 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 MARK2P16-201ENST00000605714 1723 ntBASIC13.68□□□□□ -0.22
COL28A1Q2UY09 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 ACTG1P19-201ENST00000418987 1116 ntBASIC13.68□□□□□ -0.22
COL28A1Q2UY09 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 RNLS-203ENST00000437752 525 ntTSL 2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 AC023906.1-201ENST00000486386 453 ntBASIC13.68□□□□□ -0.22
COL28A1Q2UY09 RBM4-207ENST00000506523 654 ntTSL 3 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 MBP-238ENST00000580402 915 ntTSL 5 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 AC144522.1-201ENST00000625111 1658 ntBASIC13.68□□□□□ -0.22
COL28A1Q2UY09 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 SALL4P5-201ENST00000419001 1760 ntBASIC13.68□□□□□ -0.22
COL28A1Q2UY09 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 ADAMTS7P1-201ENST00000613213 4793 ntBASIC13.68□□□□□ -0.22
COL28A1Q2UY09 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL28A1Q2UY09 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL28A1Q2UY09 CICP17-201ENST00000418553 2377 ntBASIC13.67□□□□□ -0.22
COL28A1Q2UY09 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms