Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
SOX3P41225 MYADML-201ENST00000474610 2147 ntBASIC13.42□□□□□ -0.26
SOX3P41225 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SOX3P41225 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SOX3P41225 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX3P41225 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX3P41225 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 ACTG1P2-201ENST00000415776 1125 ntBASIC13.42□□□□□ -0.26
SOX3P41225 ACTG1P11-201ENST00000425411 1125 ntBASIC13.42□□□□□ -0.26
SOX3P41225 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC13.42□□□□□ -0.26
SOX3P41225 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC13.42□□□□□ -0.26
SOX3P41225 TPI1-206ENST00000488464 791 ntTSL 5 BASIC13.42□□□□□ -0.26
SOX3P41225 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX3P41225 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX3P41225 AC027237.1-201ENST00000560942 655 ntBASIC13.42□□□□□ -0.26
SOX3P41225 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC13.42□□□□□ -0.26
SOX3P41225 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC13.42□□□□□ -0.26
SOX3P41225 RN7SL774P-201ENST00000577467 290 ntBASIC13.42□□□□□ -0.26
SOX3P41225 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.42□□□□□ -0.26
SOX3P41225 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SOX3P41225 SNX12-206ENST00000622259 661 ntTSL 5 BASIC13.42□□□□□ -0.26
SOX3P41225 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC13.42□□□□□ -0.26
SOX3P41225 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.42□□□□□ -0.26
SOX3P41225 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC13.42□□□□□ -0.26
SOX3P41225 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX3P41225 TCAM1P-207ENST00000485295 1537 ntBASIC13.42□□□□□ -0.26
SOX3P41225 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
SOX3P41225 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC13.42□□□□□ -0.26
SOX3P41225 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
SOX3P41225 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX3P41225 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX3P41225 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
SOX3P41225 MIR497HG-202ENST00000572453 3838 ntBASIC13.41□□□□□ -0.26
SOX3P41225 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
SOX3P41225 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
SOX3P41225 AL157791.1-201ENST00000553667 1699 ntBASIC13.41□□□□□ -0.26
SOX3P41225 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
SOX3P41225 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 RN7SKP214-201ENST00000364208 315 ntBASIC13.41□□□□□ -0.26
SOX3P41225 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
SOX3P41225 SLC25A24P2-201ENST00000415059 510 ntBASIC13.41□□□□□ -0.26
SOX3P41225 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC13.41□□□□□ -0.26
SOX3P41225 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX3P41225 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX3P41225 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC13.41□□□□□ -0.26
SOX3P41225 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC13.41□□□□□ -0.26
SOX3P41225 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SOX3P41225 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC13.41□□□□□ -0.26
SOX3P41225 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC13.41□□□□□ -0.26
SOX3P41225 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.41□□□□□ -0.26
SOX3P41225 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms