Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 OR52L1-201ENST00000332249 1094 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
BRCA1P38398 HFE-205ENST00000352392 653 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 KHDC1L-201ENST00000370388 635 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
BRCA1P38398 SERF2-205ENST00000403425 690 ntTSL 2 BASIC16.44■□□□□ 0.22
BRCA1P38398 RN7SL2-201ENST00000490232 300 ntBASIC16.44■□□□□ 0.22
BRCA1P38398 FAM213AP2-201ENST00000521579 683 ntBASIC16.44■□□□□ 0.22
BRCA1P38398 RPL30-213ENST00000523172 274 ntTSL 5 BASIC16.44■□□□□ 0.22
BRCA1P38398 RN7SL4P-201ENST00000584058 295 ntBASIC16.44■□□□□ 0.22
BRCA1P38398 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
BRCA1P38398 TRIP12-205ENST00000409677 1507 ntTSL 2 BASIC16.44■□□□□ 0.22
BRCA1P38398 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC16.44■□□□□ 0.22
BRCA1P38398 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
BRCA1P38398 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.44■□□□□ 0.22
BRCA1P38398 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
BRCA1P38398 AL139424.2-202ENST00000641335 1369 ntBASIC16.44■□□□□ 0.22
BRCA1P38398 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.44■□□□□ 0.22
BRCA1P38398 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
BRCA1P38398 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC16.44■□□□□ 0.22
BRCA1P38398 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 FCRLA-202ENST00000294796 766 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 SCGB1C1-201ENST00000342878 431 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 TIMM23B-201ENST00000374098 1142 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
BRCA1P38398 AC000078.1-201ENST00000420617 682 ntBASIC16.44■□□□□ 0.22
BRCA1P38398 AC159540.1-201ENST00000422600 555 ntTSL 4 BASIC16.44■□□□□ 0.22
BRCA1P38398 AL512422.2-201ENST00000426453 551 ntTSL 2 BASIC16.44■□□□□ 0.22
BRCA1P38398 AC010677.1-201ENST00000441690 412 ntBASIC16.44■□□□□ 0.22
BRCA1P38398 AC010997.1-201ENST00000447646 350 ntBASIC16.44■□□□□ 0.22
BRCA1P38398 ADPGK-202ENST00000456471 808 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
BRCA1P38398 RPL30P11-202ENST00000509114 358 ntTSL 3 BASIC16.44■□□□□ 0.22
BRCA1P38398 MXRA7-204ENST00000585519 540 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
BRCA1P38398 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
BRCA1P38398 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.43■□□□□ 0.22
BRCA1P38398 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BRCA1P38398 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
BRCA1P38398 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC16.43■□□□□ 0.22
BRCA1P38398 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BRCA1P38398 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
BRCA1P38398 ZCCHC9-203ENST00000407610 1555 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
BRCA1P38398 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BRCA1P38398 AC124944.3-201ENST00000607976 1304 ntBASIC16.43■□□□□ 0.22
BRCA1P38398 PSMA1-201ENST00000396394 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BRCA1P38398 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BRCA1P38398 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BRCA1P38398 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
BRCA1P38398 RBP1-201ENST00000232219 898 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BRCA1P38398 OR6M1-201ENST00000309154 1053 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
BRCA1P38398 AKR1C6P-201ENST00000432950 983 ntBASIC16.43■□□□□ 0.22
BRCA1P38398 SMIM26-202ENST00000435844 575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
BRCA1P38398 OR2A1-AS1-203ENST00000468575 568 ntBASIC16.43■□□□□ 0.22
BRCA1P38398 AP001979.2-201ENST00000526254 975 ntTSL 5 BASIC16.43■□□□□ 0.22
BRCA1P38398 MYL6-210ENST00000548400 573 ntTSL 3 BASIC16.43■□□□□ 0.22
BRCA1P38398 AC026583.1-201ENST00000561310 569 ntTSL 4 BASIC16.43■□□□□ 0.22
BRCA1P38398 AL592146.2-201ENST00000565388 444 ntTSL 5 BASIC16.43■□□□□ 0.22
BRCA1P38398 AC092296.1-201ENST00000587018 566 ntTSL 4 BASIC16.43■□□□□ 0.22
BRCA1P38398 MFSD12-215ENST00000615613 688 ntBASIC16.43■□□□□ 0.22
BRCA1P38398 RBP1-206ENST00000617459 667 ntTSL 2 BASIC16.43■□□□□ 0.22
BRCA1P38398 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC16.43■□□□□ 0.22
BRCA1P38398 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BRCA1P38398 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
BRCA1P38398 GOLGA8EP-201ENST00000530246 1959 ntBASIC16.43■□□□□ 0.22
BRCA1P38398 ZNF577-202ENST00000451628 1771 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
BRCA1P38398 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
BRCA1P38398 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
BRCA1P38398 IKZF3-211ENST00000394189 1552 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BRCA1P38398 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
BRCA1P38398 AL356583.1-201ENST00000398739 1371 ntBASIC16.43■□□□□ 0.22
BRCA1P38398 TUBB8-207ENST00000568866 1367 ntTSL 5 BASIC16.43■□□□□ 0.22
BRCA1P38398 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
BRCA1P38398 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.43■□□□□ 0.22
BRCA1P38398 CDC20P1-201ENST00000488829 1500 ntBASIC16.42■□□□□ 0.22
BRCA1P38398 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.42■□□□□ 0.22
BRCA1P38398 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.42■□□□□ 0.22
BRCA1P38398 CNOT4-204ENST00000414802 1687 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.42■□□□□ 0.22
BRCA1P38398 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.42■□□□□ 0.22
BRCA1P38398 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 IGHV1OR15-9-201ENST00000338912 353 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
BRCA1P38398 HIST1H3H-201ENST00000369163 1237 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
BRCA1P38398 CST11-202ENST00000377009 554 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 NUP210P2-201ENST00000510577 282 ntBASIC16.42■□□□□ 0.22
BRCA1P38398 AKR1B1P3-201ENST00000525311 588 ntBASIC16.42■□□□□ 0.22
BRCA1P38398 GABARAPL1-203ENST00000535576 792 ntTSL 5 BASIC16.42■□□□□ 0.22
BRCA1P38398 AC131009.2-201ENST00000542763 770 ntTSL 3 BASIC16.42■□□□□ 0.22
BRCA1P38398 PDLIM2-218ENST00000614502 599 ntTSL 2 BASIC16.42■□□□□ 0.22
BRCA1P38398 IFI27-214ENST00000620396 599 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
BRCA1P38398 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 HSD3B2-206ENST00000543831 1783 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
BRCA1P38398 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
BRCA1P38398 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms