Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
COL9A1P20849 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.48□□□□□ -0.09
COL9A1P20849 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC14.48□□□□□ -0.09
COL9A1P20849 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.48□□□□□ -0.09
COL9A1P20849 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC14.48□□□□□ -0.09
COL9A1P20849 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
COL9A1P20849 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC14.48□□□□□ -0.09
COL9A1P20849 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC14.48□□□□□ -0.09
COL9A1P20849 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
COL9A1P20849 SIRPB3P-201ENST00000340424 1216 ntBASIC14.48□□□□□ -0.09
COL9A1P20849 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 SAT1-201ENST00000379251 801 ntTSL 2 BASIC14.48□□□□□ -0.09
COL9A1P20849 SAT1-202ENST00000379253 909 ntTSL 2 BASIC14.48□□□□□ -0.09
COL9A1P20849 SAT1-203ENST00000379254 868 ntTSL 3 BASIC14.48□□□□□ -0.09
COL9A1P20849 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 SOD1-202ENST00000389995 865 ntTSL 3 BASIC14.48□□□□□ -0.09
COL9A1P20849 GAPDH-202ENST00000396856 1266 ntTSL 5 BASIC14.48□□□□□ -0.09
COL9A1P20849 CA5BP1-205ENST00000435806 1064 ntBASIC14.48□□□□□ -0.09
COL9A1P20849 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 AL450346.2-201ENST00000495602 1024 ntBASIC14.48□□□□□ -0.09
COL9A1P20849 HAUS1P1-201ENST00000505275 832 ntBASIC14.48□□□□□ -0.09
COL9A1P20849 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC14.48□□□□□ -0.09
COL9A1P20849 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC14.48□□□□□ -0.09
COL9A1P20849 AP003168.1-201ENST00000530091 307 ntBASIC14.48□□□□□ -0.09
COL9A1P20849 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC14.48□□□□□ -0.09
COL9A1P20849 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 MIR6165-201ENST00000614803 84 ntBASIC14.48□□□□□ -0.09
COL9A1P20849 UCHL3-206ENST00000618773 1050 ntTSL 5 BASIC14.48□□□□□ -0.09
COL9A1P20849 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.48□□□□□ -0.09
COL9A1P20849 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
COL9A1P20849 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
COL9A1P20849 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.48□□□□□ -0.09
COL9A1P20849 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL9A1P20849 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
COL9A1P20849 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
COL9A1P20849 SHMT1P1-201ENST00000419974 1312 ntBASIC14.47□□□□□ -0.09
COL9A1P20849 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
COL9A1P20849 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.47□□□□□ -0.09
COL9A1P20849 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.47□□□□□ -0.09
COL9A1P20849 AC068587.6-202ENST00000641839 5619 ntBASIC14.47□□□□□ -0.09
COL9A1P20849 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
COL9A1P20849 LAP3P2-201ENST00000454686 1454 ntBASIC14.47□□□□□ -0.09
COL9A1P20849 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
COL9A1P20849 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC14.47□□□□□ -0.09
COL9A1P20849 MRPL19-203ENST00000409374 1076 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
COL9A1P20849 AC073316.2-201ENST00000414126 418 ntTSL 2 BASIC14.47□□□□□ -0.09
COL9A1P20849 RPS3AP29-201ENST00000437728 769 ntBASIC14.47□□□□□ -0.09
COL9A1P20849 AC004771.1-201ENST00000438266 583 ntTSL 2 BASIC14.47□□□□□ -0.09
COL9A1P20849 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC14.47□□□□□ -0.09
COL9A1P20849 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.47□□□□□ -0.09
COL9A1P20849 RN7SL564P-201ENST00000496309 250 ntBASIC14.47□□□□□ -0.09
COL9A1P20849 RPSAP70-201ENST00000504462 864 ntBASIC14.47□□□□□ -0.09
COL9A1P20849 AC093534.1-201ENST00000504977 132 ntBASIC14.47□□□□□ -0.09
COL9A1P20849 AC109830.1-203ENST00000506638 467 ntTSL 2 BASIC14.47□□□□□ -0.09
COL9A1P20849 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC14.47□□□□□ -0.09
COL9A1P20849 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC14.47□□□□□ -0.09
COL9A1P20849 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC14.47□□□□□ -0.09
COL9A1P20849 CACNA1C-AS1-203ENST00000544517 742 ntTSL 4 BASIC14.47□□□□□ -0.09
COL9A1P20849 AL133453.1-201ENST00000554055 581 ntTSL 3 BASIC14.47□□□□□ -0.09
COL9A1P20849 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC14.47□□□□□ -0.09
COL9A1P20849 AC005586.2-201ENST00000563946 837 ntBASIC14.47□□□□□ -0.09
COL9A1P20849 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC14.47□□□□□ -0.09
COL9A1P20849 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 FXYD3-210ENST00000604621 548 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
COL9A1P20849 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC14.47□□□□□ -0.09
COL9A1P20849 AC106782.5-201ENST00000616011 337 ntBASIC14.47□□□□□ -0.09
COL9A1P20849 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC14.47□□□□□ -0.09
COL9A1P20849 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC14.47□□□□□ -0.09
COL9A1P20849 AC106730.3-201ENST00000624568 641 ntBASIC14.47□□□□□ -0.09
COL9A1P20849 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC14.47□□□□□ -0.09
COL9A1P20849 AC021072.1-201ENST00000635789 835 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
COL9A1P20849 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL9A1P20849 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC14.47□□□□□ -0.09
COL9A1P20849 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms