Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.73■□□□□ 0.11
TPM1P09493 AC136604.1-202ENST00000425471 771 ntBASIC15.73■□□□□ 0.11
TPM1P09493 AC012441.1-201ENST00000446669 685 ntBASIC15.73■□□□□ 0.11
TPM1P09493 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TPM1P09493 ELK1P1-201ENST00000485699 580 ntBASIC15.73■□□□□ 0.11
TPM1P09493 INGX-202ENST00000489074 768 ntBASIC15.73■□□□□ 0.11
TPM1P09493 PTP4A1P2-201ENST00000546033 454 ntBASIC15.73■□□□□ 0.11
TPM1P09493 AC106820.3-201ENST00000561653 397 ntBASIC15.73■□□□□ 0.11
TPM1P09493 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.73■□□□□ 0.11
TPM1P09493 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.73■□□□□ 0.11
TPM1P09493 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
TPM1P09493 AC027601.3-201ENST00000622907 509 ntBASIC15.73■□□□□ 0.11
TPM1P09493 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.73■□□□□ 0.11
TPM1P09493 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
TPM1P09493 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TPM1P09493 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TPM1P09493 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC15.73■□□□□ 0.11
TPM1P09493 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
TPM1P09493 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC15.73■□□□□ 0.11
TPM1P09493 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC15.73■□□□□ 0.11
TPM1P09493 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
TPM1P09493 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TPM1P09493 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TPM1P09493 HTR2C-201ENST00000276198 4751 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TPM1P09493 TCF4-248ENST00000616053 8140 ntTSL 5 BASIC15.73■□□□□ 0.11
TPM1P09493 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TPM1P09493 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TPM1P09493 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC15.73■□□□□ 0.11
TPM1P09493 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TPM1P09493 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
TPM1P09493 IKZF1-211ENST00000440768 5511 ntTSL 5 BASIC15.72■□□□□ 0.11
TPM1P09493 PPP4R3B-203ENST00000611717 5243 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 KLHL7-202ENST00000339077 5620 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.72■□□□□ 0.11
TPM1P09493 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
TPM1P09493 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
TPM1P09493 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC15.72■□□□□ 0.11
TPM1P09493 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC15.72■□□□□ 0.11
TPM1P09493 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC15.72■□□□□ 0.11
TPM1P09493 URGCP-201ENST00000336086 5658 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.72■□□□□ 0.11
TPM1P09493 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.72■□□□□ 0.11
TPM1P09493 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.72■□□□□ 0.11
TPM1P09493 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
TPM1P09493 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
TPM1P09493 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.72■□□□□ 0.11
TPM1P09493 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.72■□□□□ 0.11
TPM1P09493 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.72■□□□□ 0.11
TPM1P09493 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.72■□□□□ 0.11
TPM1P09493 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC15.72■□□□□ 0.11
TPM1P09493 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
TPM1P09493 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 DYSF-202ENST00000394120 6543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 PDIA3P1-201ENST00000471856 1510 ntBASIC15.72■□□□□ 0.11
TPM1P09493 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
TPM1P09493 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC15.72■□□□□ 0.11
TPM1P09493 TP53INP1-202ENST00000448464 5631 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC15.72■□□□□ 0.11
TPM1P09493 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC15.72■□□□□ 0.11
TPM1P09493 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
TPM1P09493 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
TPM1P09493 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC15.71■□□□□ 0.11
TPM1P09493 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC15.71■□□□□ 0.11
TPM1P09493 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
TPM1P09493 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
TPM1P09493 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM1P09493 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM1P09493 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM1P09493 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC15.71■□□□□ 0.11
TPM1P09493 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM1P09493 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM1P09493 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
TPM1P09493 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC15.71■□□□□ 0.11
TPM1P09493 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM1P09493 AP000437.1-201ENST00000624057 2085 ntBASIC15.71■□□□□ 0.11
TPM1P09493 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM1P09493 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM1P09493 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM1P09493 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
TPM1P09493 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.71■□□□□ 0.11
TPM1P09493 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
TPM1P09493 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms