Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.13■□□□□ 0.17
SCN4AP35499 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.13■□□□□ 0.17
SCN4AP35499 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 ZC3H8-201ENST00000272570 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 CAPN14-202ENST00000403897 2197 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SCN4AP35499 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.13■□□□□ 0.17
SCN4AP35499 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 FAM25A-201ENST00000343959 345 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 POLR3DP1-201ENST00000398689 1176 ntBASIC16.13■□□□□ 0.17
SCN4AP35499 AC010997.1-201ENST00000447646 350 ntBASIC16.13■□□□□ 0.17
SCN4AP35499 AL583804.1-201ENST00000448643 810 ntTSL 3 BASIC16.13■□□□□ 0.17
SCN4AP35499 RAB34-211ENST00000450529 1184 ntTSL 2 BASIC16.13■□□□□ 0.17
SCN4AP35499 RN7SL477P-201ENST00000488440 286 ntBASIC16.13■□□□□ 0.17
SCN4AP35499 RAB42P1-201ENST00000555078 316 ntBASIC16.13■□□□□ 0.17
SCN4AP35499 AC100778.4-201ENST00000581232 582 ntTSL 4 BASIC16.13■□□□□ 0.17
SCN4AP35499 AL139260.3-204ENST00000621281 609 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SCN4AP35499 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
SCN4AP35499 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SCN4AP35499 MIR100HG-219ENST00000533109 1794 ntTSL 5 BASIC16.13■□□□□ 0.17
SCN4AP35499 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.13■□□□□ 0.17
SCN4AP35499 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC16.13■□□□□ 0.17
SCN4AP35499 LINC00337-201ENST00000429480 1302 ntTSL 2 BASIC16.13■□□□□ 0.17
SCN4AP35499 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SCN4AP35499 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
SCN4AP35499 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC16.13■□□□□ 0.17
SCN4AP35499 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SCN4AP35499 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.13■□□□□ 0.17
SCN4AP35499 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SCN4AP35499 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
SCN4AP35499 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 LCE4A-201ENST00000335535 388 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
SCN4AP35499 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 AL391903.1-201ENST00000407513 365 ntBASIC16.12■□□□□ 0.17
SCN4AP35499 AL358876.2-201ENST00000424689 477 ntTSL 3 BASIC16.12■□□□□ 0.17
SCN4AP35499 POU5F1-202ENST00000441888 1055 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 AC008267.3-201ENST00000448776 712 ntBASIC16.12■□□□□ 0.17
SCN4AP35499 RASGRF2-AS1-202ENST00000505694 535 ntTSL 3 BASIC16.12■□□□□ 0.17
SCN4AP35499 TEX38-204ENST00000564373 637 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 CLDN6-203ENST00000572154 461 ntTSL 3 BASIC16.12■□□□□ 0.17
SCN4AP35499 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
SCN4AP35499 ZNF677-207ENST00000598806 701 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 RCC2P5-201ENST00000492126 1487 ntBASIC16.12■□□□□ 0.17
SCN4AP35499 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 AC093462.1-201ENST00000621167 1683 ntBASIC16.12■□□□□ 0.17
SCN4AP35499 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
SCN4AP35499 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SCN4AP35499 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.12■□□□□ 0.17
SCN4AP35499 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SCN4AP35499 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.12■□□□□ 0.17
SCN4AP35499 AC008741.2-201ENST00000612792 3115 ntBASIC16.12■□□□□ 0.17
SCN4AP35499 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 CACNB4-201ENST00000201943 1389 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 OR6M1-201ENST00000309154 1053 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
SCN4AP35499 TAGLN2-201ENST00000320307 709 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
SCN4AP35499 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 AKR1C6P-201ENST00000432950 983 ntBASIC16.12■□□□□ 0.17
SCN4AP35499 DHRSX-IT1-201ENST00000437244 651 ntTSL 5 BASIC16.12■□□□□ 0.17
SCN4AP35499 AC005011.1-201ENST00000455206 210 ntBASIC16.12■□□□□ 0.17
SCN4AP35499 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC16.12■□□□□ 0.17
SCN4AP35499 WISP1-205ENST00000519433 545 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC16.12■□□□□ 0.17
SCN4AP35499 AC116552.1-201ENST00000563243 733 ntTSL 3 BASIC16.12■□□□□ 0.17
SCN4AP35499 AC009041.1-202ENST00000599946 987 ntTSL 5 BASIC16.12■□□□□ 0.17
SCN4AP35499 AC006273.1-201ENST00000606966 861 ntBASIC16.12■□□□□ 0.17
SCN4AP35499 AC005609.1-201ENST00000625195 617 ntTSL 5 BASIC16.12■□□□□ 0.17
SCN4AP35499 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SCN4AP35499 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.12■□□□□ 0.17
SCN4AP35499 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SCN4AP35499 AC012358.2-201ENST00000430010 1434 ntBASIC16.11■□□□□ 0.17
SCN4AP35499 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC16.11■□□□□ 0.17
SCN4AP35499 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC16.11■□□□□ 0.17
SCN4AP35499 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
SCN4AP35499 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SCN4AP35499 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SCN4AP35499 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SCN4AP35499 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
SCN4AP35499 IL1RN-205ENST00000409930 848 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SCN4AP35499 AL157823.2-201ENST00000452048 669 ntTSL 3 BASIC16.11■□□□□ 0.17
SCN4AP35499 HNRNPA1P4-201ENST00000509706 756 ntBASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms