Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC15.89■□□□□ 0.13
CIITAP33076 AC132825.4-202ENST00000578792 434 ntBASIC15.89■□□□□ 0.13
CIITAP33076 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC15.89■□□□□ 0.13
CIITAP33076 AC025262.2-201ENST00000623975 1056 ntBASIC15.89■□□□□ 0.13
CIITAP33076 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CIITAP33076 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 OR2I1P-210ENST00000642037 4691 ntBASIC15.89■□□□□ 0.13
CIITAP33076 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CIITAP33076 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC15.89■□□□□ 0.13
CIITAP33076 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CIITAP33076 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC15.88■□□□□ 0.13
CIITAP33076 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC15.88■□□□□ 0.13
CIITAP33076 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CIITAP33076 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.88■□□□□ 0.13
CIITAP33076 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
CIITAP33076 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC15.88■□□□□ 0.13
CIITAP33076 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC15.88■□□□□ 0.13
CIITAP33076 AC092506.1-202ENST00000401022 528 ntBASIC15.88■□□□□ 0.13
CIITAP33076 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC15.88■□□□□ 0.13
CIITAP33076 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC15.88■□□□□ 0.13
CIITAP33076 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC15.88■□□□□ 0.13
CIITAP33076 AL031713.1-201ENST00000564813 661 ntBASIC15.88■□□□□ 0.13
CIITAP33076 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC15.88■□□□□ 0.13
CIITAP33076 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC15.88■□□□□ 0.13
CIITAP33076 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC15.88■□□□□ 0.13
CIITAP33076 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CIITAP33076 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC15.88■□□□□ 0.13
CIITAP33076 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC15.88■□□□□ 0.13
CIITAP33076 AL805961.1-201ENST00000642026 753 ntBASIC15.88■□□□□ 0.13
CIITAP33076 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CIITAP33076 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC15.88■□□□□ 0.13
CIITAP33076 AC093462.1-201ENST00000621167 1683 ntBASIC15.88■□□□□ 0.13
CIITAP33076 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 AC006480.2-201ENST00000609770 1337 ntBASIC15.88■□□□□ 0.13
CIITAP33076 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CIITAP33076 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.88■□□□□ 0.13
CIITAP33076 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC15.87■□□□□ 0.13
CIITAP33076 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CIITAP33076 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC15.87■□□□□ 0.13
CIITAP33076 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC15.87■□□□□ 0.13
CIITAP33076 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
CIITAP33076 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CIITAP33076 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CIITAP33076 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC15.87■□□□□ 0.13
CIITAP33076 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CIITAP33076 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CIITAP33076 FMO6P-201ENST00000236166 1620 ntBASIC15.87■□□□□ 0.13
CIITAP33076 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
CIITAP33076 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CIITAP33076 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CIITAP33076 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CIITAP33076 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
CIITAP33076 AC019109.1-201ENST00000401725 1874 ntBASIC15.87■□□□□ 0.13
CIITAP33076 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CIITAP33076 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CIITAP33076 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
CIITAP33076 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CIITAP33076 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC15.87■□□□□ 0.13
CIITAP33076 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
CIITAP33076 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC15.87■□□□□ 0.13
CIITAP33076 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC15.87■□□□□ 0.13
CIITAP33076 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC15.87■□□□□ 0.13
CIITAP33076 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC15.87■□□□□ 0.13
CIITAP33076 WDR7-208ENST00000589935 544 ntTSL 4 BASIC15.87■□□□□ 0.13
CIITAP33076 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
CIITAP33076 AC091769.1-201ENST00000619576 568 ntBASIC15.87■□□□□ 0.13
CIITAP33076 AL139424.3-202ENST00000641619 917 ntBASIC15.87■□□□□ 0.13
CIITAP33076 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CIITAP33076 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
CIITAP33076 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC15.87■□□□□ 0.13
CIITAP33076 AL359881.3-201ENST00000602640 1721 ntBASIC15.87■□□□□ 0.13
CIITAP33076 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
CIITAP33076 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms