Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 AP006547.1-201ENST00000563435 692 ntBASIC14.09□□□□□ -0.15
COL6A2P12110 MIR4783-201ENST00000580343 82 ntBASIC14.09□□□□□ -0.15
COL6A2P12110 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC14.09□□□□□ -0.15
COL6A2P12110 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.09□□□□□ -0.15
COL6A2P12110 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
COL6A2P12110 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A2P12110 AC133540.1-201ENST00000620845 1019 ntBASIC14.09□□□□□ -0.15
COL6A2P12110 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
COL6A2P12110 SNORA50.1-201ENST00000628590 135 ntBASIC14.09□□□□□ -0.15
COL6A2P12110 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A2P12110 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A2P12110 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A2P12110 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A2P12110 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A2P12110 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A2P12110 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A2P12110 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC14.09□□□□□ -0.15
COL6A2P12110 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A2P12110 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A2P12110 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC14.09□□□□□ -0.15
COL6A2P12110 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
COL6A2P12110 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC14.08□□□□□ -0.15
COL6A2P12110 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A2P12110 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
COL6A2P12110 PCDHA5-203ENST00000614258 4248 ntBASIC14.08□□□□□ -0.15
COL6A2P12110 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A2P12110 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A2P12110 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC14.08□□□□□ -0.15
COL6A2P12110 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A2P12110 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A2P12110 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 RPL13AP3-202ENST00000494676 1473 ntBASIC14.08□□□□□ -0.16
COL6A2P12110 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A2P12110 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.08□□□□□ -0.16
COL6A2P12110 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC14.08□□□□□ -0.16
COL6A2P12110 AL035633.1-201ENST00000406139 838 ntBASIC14.08□□□□□ -0.16
COL6A2P12110 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A2P12110 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 RPL7P3-201ENST00000441388 714 ntBASIC14.08□□□□□ -0.16
COL6A2P12110 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A2P12110 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.08□□□□□ -0.16
COL6A2P12110 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.08□□□□□ -0.16
COL6A2P12110 AL596325.1-201ENST00000563991 1082 ntBASIC14.08□□□□□ -0.16
COL6A2P12110 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.08□□□□□ -0.16
COL6A2P12110 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC14.08□□□□□ -0.16
COL6A2P12110 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.16
COL6A2P12110 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A2P12110 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC14.08□□□□□ -0.16
COL6A2P12110 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A2P12110 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC14.08□□□□□ -0.16
COL6A2P12110 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC14.08□□□□□ -0.16
COL6A2P12110 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
COL6A2P12110 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
COL6A2P12110 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A2P12110 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 STK26-204ENST00000481105 1835 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A2P12110 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 LINC01165-201ENST00000445190 1623 ntBASIC14.08□□□□□ -0.16
COL6A2P12110 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.08□□□□□ -0.16
COL6A2P12110 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A2P12110 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
COL6A2P12110 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 OS9-218ENST00000551035 2246 ntTSL 2 BASIC14.07□□□□□ -0.16
COL6A2P12110 MSNP1-201ENST00000511640 1732 ntBASIC14.07□□□□□ -0.16
COL6A2P12110 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC14.07□□□□□ -0.16
COL6A2P12110 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC14.07□□□□□ -0.16
COL6A2P12110 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
COL6A2P12110 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.07□□□□□ -0.16
COL6A2P12110 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
COL6A2P12110 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 AL365181.3-201ENST00000605886 3222 ntBASIC14.07□□□□□ -0.16
COL6A2P12110 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 AC079178.1-201ENST00000420915 656 ntBASIC14.07□□□□□ -0.16
COL6A2P12110 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.07□□□□□ -0.16
COL6A2P12110 KLF2P1-201ENST00000447438 1042 ntBASIC14.07□□□□□ -0.16
COL6A2P12110 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.07□□□□□ -0.16
COL6A2P12110 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A2P12110 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC14.07□□□□□ -0.16
COL6A2P12110 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC14.07□□□□□ -0.16
COL6A2P12110 AC100827.2-201ENST00000563214 1194 ntBASIC14.07□□□□□ -0.16
COL6A2P12110 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.07□□□□□ -0.16
COL6A2P12110 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.07□□□□□ -0.16
COL6A2P12110 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms