Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC16.74■□□□□ 0.27
HMGB1P09429 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC16.74■□□□□ 0.27
HMGB1P09429 ABCD1P2-201ENST00000429313 1601 ntBASIC16.74■□□□□ 0.27
HMGB1P09429 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC16.74■□□□□ 0.27
HMGB1P09429 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HMGB1P09429 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
HMGB1P09429 DCAF4-203ENST00000394234 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGB1P09429 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC16.73■□□□□ 0.27
HMGB1P09429 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
HMGB1P09429 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
HMGB1P09429 SALL4P6-201ENST00000429385 1691 ntBASIC16.73■□□□□ 0.27
HMGB1P09429 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGB1P09429 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 AC239868.1-201ENST00000369385 493 ntBASIC16.73■□□□□ 0.27
HMGB1P09429 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
HMGB1P09429 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.73■□□□□ 0.27
HMGB1P09429 AC006987.1-201ENST00000413610 527 ntBASIC16.73■□□□□ 0.27
HMGB1P09429 DUX4L50-201ENST00000455245 715 ntBASIC16.73■□□□□ 0.27
HMGB1P09429 AC116345.2-201ENST00000512837 523 ntBASIC16.73■□□□□ 0.27
HMGB1P09429 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGB1P09429 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC16.73■□□□□ 0.27
HMGB1P09429 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC16.73■□□□□ 0.27
HMGB1P09429 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGB1P09429 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
HMGB1P09429 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HMGB1P09429 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC16.73■□□□□ 0.27
HMGB1P09429 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGB1P09429 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB1P09429 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HMGB1P09429 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC16.73■□□□□ 0.27
HMGB1P09429 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC16.73■□□□□ 0.27
HMGB1P09429 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGB1P09429 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
HMGB1P09429 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.72■□□□□ 0.27
HMGB1P09429 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGB1P09429 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGB1P09429 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
HMGB1P09429 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 BX679664.3-201ENST00000414070 555 ntBASIC16.72■□□□□ 0.27
HMGB1P09429 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.72■□□□□ 0.27
HMGB1P09429 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.72■□□□□ 0.27
HMGB1P09429 AC113935.1-201ENST00000471722 555 ntBASIC16.72■□□□□ 0.27
HMGB1P09429 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.72■□□□□ 0.27
HMGB1P09429 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HMGB1P09429 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGB1P09429 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
HMGB1P09429 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 AC105206.1-202ENST00000314927 2368 ntBASIC16.72■□□□□ 0.27
HMGB1P09429 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HMGB1P09429 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGB1P09429 STK3-218ENST00000617590 2485 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGB1P09429 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HMGB1P09429 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
HMGB1P09429 AC135782.3-201ENST00000562782 2105 ntBASIC16.72■□□□□ 0.27
HMGB1P09429 AL157791.1-201ENST00000553667 1699 ntBASIC16.72■□□□□ 0.27
HMGB1P09429 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB1P09429 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HMGB1P09429 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGB1P09429 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms