Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC11.92□□□□□ -0.5
HOXA1P49639 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC11.92□□□□□ -0.5
HOXA1P49639 MARCH10-201ENST00000311269 3090 ntAPPRIS P3 TSL 2 BASIC11.92□□□□□ -0.5
HOXA1P49639 BHMT2-201ENST00000255192 2050 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
HOXA1P49639 C1QBPP1-201ENST00000400117 770 ntBASIC11.92□□□□□ -0.5
HOXA1P49639 TLE1P1-201ENST00000422965 589 ntBASIC11.92□□□□□ -0.5
HOXA1P49639 TSSK5P-201ENST00000423978 907 ntBASIC11.92□□□□□ -0.5
HOXA1P49639 AC134915.1-201ENST00000426461 574 ntBASIC11.92□□□□□ -0.5
HOXA1P49639 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC11.92□□□□□ -0.5
HOXA1P49639 AL512638.1-201ENST00000457493 794 ntBASIC11.92□□□□□ -0.5
HOXA1P49639 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 AC026434.2-201ENST00000506094 1078 ntBASIC11.92□□□□□ -0.5
HOXA1P49639 AC104596.2-201ENST00000512793 793 ntBASIC11.92□□□□□ -0.5
HOXA1P49639 DOC2GP-202ENST00000514950 1163 ntBASIC11.92□□□□□ -0.5
HOXA1P49639 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC11.92□□□□□ -0.5
HOXA1P49639 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC11.92□□□□□ -0.5
HOXA1P49639 AC120045.2-201ENST00000567334 178 ntBASIC11.92□□□□□ -0.5
HOXA1P49639 AC009407.1-201ENST00000568958 598 ntBASIC11.92□□□□□ -0.5
HOXA1P49639 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC11.92□□□□□ -0.5
HOXA1P49639 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC11.92□□□□□ -0.5
HOXA1P49639 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC11.92□□□□□ -0.5
HOXA1P49639 AL691403.2-201ENST00000618460 490 ntBASIC11.92□□□□□ -0.5
HOXA1P49639 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC11.92□□□□□ -0.5
HOXA1P49639 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 AL139011.2-201ENST00000556710 2635 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
HOXA1P49639 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 ARAP3-207ENST00000626478 4928 ntTSL 5 BASIC11.92□□□□□ -0.5
HOXA1P49639 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
HOXA1P49639 LDLRAD4-201ENST00000359446 8486 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC11.92□□□□□ -0.5
HOXA1P49639 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
HOXA1P49639 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
HOXA1P49639 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
HOXA1P49639 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
HOXA1P49639 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 ROBO1-212ENST00000618833 7492 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
HOXA1P49639 BCDIN3D-AS1-201ENST00000548872 3078 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 SLC44A4-203ENST00000375562 2505 ntTSL 2 BASIC11.91□□□□□ -0.5
HOXA1P49639 PM20D1-201ENST00000367136 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
HOXA1P49639 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
HOXA1P49639 AC020910.6-201ENST00000623084 1459 ntBASIC11.91□□□□□ -0.5
HOXA1P49639 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
HOXA1P49639 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC11.91□□□□□ -0.5
HOXA1P49639 AC015688.4-201ENST00000580780 1647 ntBASIC11.91□□□□□ -0.5
HOXA1P49639 ACVR2A-201ENST00000241416 5728 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 WARS-203ENST00000358655 2466 ntTSL 2 BASIC11.91□□□□□ -0.5
HOXA1P49639 SARDH-204ENST00000371872 3344 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC11.91□□□□□ -0.5
HOXA1P49639 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 HLA-DRB6-201ENST00000411500 1235 ntBASIC11.91□□□□□ -0.5
HOXA1P49639 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC11.91□□□□□ -0.5
HOXA1P49639 RHOA-206ENST00000454011 889 ntTSL 2 BASIC11.91□□□□□ -0.5
HOXA1P49639 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC11.91□□□□□ -0.5
HOXA1P49639 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC11.91□□□□□ -0.5
HOXA1P49639 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC11.91□□□□□ -0.5
HOXA1P49639 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
HOXA1P49639 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC11.91□□□□□ -0.5
HOXA1P49639 DUX4L47-201ENST00000566374 394 ntBASIC11.91□□□□□ -0.5
HOXA1P49639 SPDYE22P-201ENST00000582158 798 ntBASIC11.91□□□□□ -0.5
HOXA1P49639 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
HOXA1P49639 AL662799.1-202ENST00000614205 422 ntBASIC11.91□□□□□ -0.5
HOXA1P49639 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC11.91□□□□□ -0.5
HOXA1P49639 AC004840.1-201ENST00000636359 365 ntBASIC11.91□□□□□ -0.5
HOXA1P49639 AL603764.1-201ENST00000636452 321 ntBASIC11.91□□□□□ -0.5
HOXA1P49639 PRSS30P-206ENST00000641773 873 ntBASIC11.91□□□□□ -0.5
HOXA1P49639 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 PER1-202ENST00000354903 3115 ntTSL 2 BASIC11.91□□□□□ -0.5
HOXA1P49639 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC11.91□□□□□ -0.5
HOXA1P49639 POLL-202ENST00000339310 2289 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 RNF219-AS1-209ENST00000606429 2418 ntTSL 2 BASIC11.91□□□□□ -0.5
HOXA1P49639 CADM1-206ENST00000537058 3550 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 MAP2-201ENST00000199940 2241 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 EME1-202ENST00000393271 2354 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
HOXA1P49639 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
HOXA1P49639 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms