Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC15.3■□□□□ 0.04
HTTP42858 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
HTTP42858 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HTTP42858 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HTTP42858 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HTTP42858 LINC00685-201ENST00000391707 428 ntTSL 5 BASIC15.3■□□□□ 0.04
HTTP42858 PHBP3-201ENST00000412562 819 ntBASIC15.3■□□□□ 0.04
HTTP42858 HTATIP2-203ENST00000443524 967 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
HTTP42858 TULP3P1-202ENST00000453253 1291 ntBASIC15.3■□□□□ 0.04
HTTP42858 RN7SL646P-201ENST00000492969 297 ntBASIC15.3■□□□□ 0.04
HTTP42858 AC136698.1-201ENST00000558110 546 ntTSL 4 BASIC15.3■□□□□ 0.04
HTTP42858 AC048382.4-201ENST00000559065 546 ntTSL 4 BASIC15.3■□□□□ 0.04
HTTP42858 AC003688.2-201ENST00000576271 415 ntTSL 3 BASIC15.3■□□□□ 0.04
HTTP42858 CYP4F10P-201ENST00000589560 752 ntBASIC15.3■□□□□ 0.04
HTTP42858 SKINT1L-204ENST00000604015 540 ntTSL 4 BASIC15.3■□□□□ 0.04
HTTP42858 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HTTP42858 COMMD10-207ENST00000632434 1433 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HTTP42858 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HTTP42858 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.29■□□□□ 0.04
HTTP42858 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC15.29■□□□□ 0.04
HTTP42858 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.29■□□□□ 0.04
HTTP42858 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
HTTP42858 RPS6-201ENST00000315377 863 ntTSL 3 BASIC15.29■□□□□ 0.04
HTTP42858 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
HTTP42858 AC074019.1-201ENST00000428788 1096 ntBASIC15.29■□□□□ 0.04
HTTP42858 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC15.29■□□□□ 0.04
HTTP42858 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC15.29■□□□□ 0.04
HTTP42858 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC15.29■□□□□ 0.04
HTTP42858 ZNF677-207ENST00000598806 701 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 AC112702.1-201ENST00000623712 366 ntBASIC15.29■□□□□ 0.04
HTTP42858 WASH5P-206ENST00000632506 1147 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
HTTP42858 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HTTP42858 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HTTP42858 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC15.29■□□□□ 0.04
HTTP42858 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 GMPR2-205ENST00000456667 1484 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC15.29■□□□□ 0.04
HTTP42858 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.29■□□□□ 0.04
HTTP42858 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 CRYGD-201ENST00000264376 619 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 ABCD3-201ENST00000315713 884 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 RPSAP61-201ENST00000412542 878 ntBASIC15.29■□□□□ 0.04
HTTP42858 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC15.29■□□□□ 0.04
HTTP42858 RPL13AP5-201ENST00000439189 612 ntBASIC15.29■□□□□ 0.04
HTTP42858 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 JPT1-205ENST00000470924 663 ntTSL 5 BASIC15.29■□□□□ 0.04
HTTP42858 FAM153C-208ENST00000511189 926 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
HTTP42858 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC15.29■□□□□ 0.04
HTTP42858 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 BCAR1P1-201ENST00000553953 636 ntBASIC15.29■□□□□ 0.04
HTTP42858 RN7SL162P-201ENST00000579233 292 ntBASIC15.29■□□□□ 0.04
HTTP42858 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC15.29■□□□□ 0.04
HTTP42858 RN7SL460P-201ENST00000582806 258 ntBASIC15.29■□□□□ 0.04
HTTP42858 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 SEPT4-223ENST00000583114 1709 ntTSL 2 BASIC15.29■□□□□ 0.04
HTTP42858 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
HTTP42858 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
HTTP42858 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
HTTP42858 OR2C1-201ENST00000304936 1406 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
HTTP42858 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.28■□□□□ 0.04
HTTP42858 LINC01137-201ENST00000424989 1395 ntTSL 2 BASIC15.28■□□□□ 0.04
HTTP42858 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC15.28■□□□□ 0.04
HTTP42858 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
HTTP42858 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
HTTP42858 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
HTTP42858 AL512422.2-201ENST00000426453 551 ntTSL 2 BASIC15.28■□□□□ 0.04
HTTP42858 YBX1P3-201ENST00000468366 909 ntBASIC15.28■□□□□ 0.04
HTTP42858 AC104212.2-201ENST00000478813 628 ntBASIC15.28■□□□□ 0.04
HTTP42858 AC246817.2-204ENST00000517984 562 ntTSL 4 BASIC15.28■□□□□ 0.04
HTTP42858 AC022634.2-201ENST00000521504 382 ntTSL 3 BASIC15.28■□□□□ 0.04
HTTP42858 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC15.28■□□□□ 0.04
HTTP42858 AC092634.5-206ENST00000593670 812 ntTSL 5 BASIC15.28■□□□□ 0.04
HTTP42858 MIR6074-201ENST00000612054 107 ntBASIC15.28■□□□□ 0.04
HTTP42858 SNORA50D-202ENST00000627561 132 ntBASIC15.28■□□□□ 0.04
HTTP42858 AL590094.1-206ENST00000635959 478 ntTSL 5 BASIC15.28■□□□□ 0.04
HTTP42858 AL590094.1-209ENST00000637260 499 ntTSL 5 BASIC15.28■□□□□ 0.04
HTTP42858 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HTTP42858 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HTTP42858 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
HTTP42858 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HTTP42858 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HTTP42858 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
HTTP42858 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
HTTP42858 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms