Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 AC026271.4-201ENST00000578214 1833 ntBASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 AC004623.1-201ENST00000624592 2127 ntBASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 TPM3P8-201ENST00000330554 643 ntBASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 AC012441.1-201ENST00000446669 685 ntBASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 SPTLC1P1-201ENST00000447199 261 ntBASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 PAM16-204ENST00000571941 674 ntTSL 3 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 AC025183.3-201ENST00000623526 1482 ntBASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 AC008620.2-201ENST00000510294 1569 ntBASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 PRKAB1-205ENST00000540121 1673 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 LINC00846-201ENST00000334165 1778 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 AC012531.1-201ENST00000562848 2680 ntBASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 BTNL8-201ENST00000231229 2229 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 AC108024.1-201ENST00000626286 1721 ntBASIC13.9□□□□□ -0.18
CCDC28BQ9BUN5 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.19
CCDC28BQ9BUN5 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
CCDC28BQ9BUN5 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 PDE4A-204ENST00000440014 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 ZNF410-201ENST00000324593 2293 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 SLC1A2-208ENST00000606205 1890 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 RCC2P1-201ENST00000452257 1476 ntBASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 ELK1P1-201ENST00000485699 580 ntBASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 AC009118.2-201ENST00000613275 655 ntBASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 ETV2-208ENST00000621247 941 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC28BQ9BUN5 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms