Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 AL513477.1-201ENST00000602865 2407 ntBASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 LY6E-215ENST00000523847 427 ntTSL 3 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC88AQ3V6T2 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
CCDC88AQ3V6T2 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
CCDC88AQ3V6T2 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.96■□□□□ 0.3
CCDC88AQ3V6T2 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 AC092810.2-201ENST00000431570 362 ntBASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 MIR5091-201ENST00000578707 93 ntBASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 MPV17-209ENST00000405983 859 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 AC132812.1-201ENST00000583145 892 ntBASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC88AQ3V6T2 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 AL590824.1-201ENST00000403828 1349 ntBASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 WDR54-202ENST00000409791 854 ntTSL 3 BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 AC008494.1-201ENST00000497612 796 ntBASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 HNRNPA1P56-201ENST00000505767 954 ntBASIC16.94■□□□□ 0.3
CCDC88AQ3V6T2 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 362 ms