Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.53
CDX1P47902 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 MAN2C1-242ENST00000569482 3177 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC11.77□□□□□ -0.53
CDX1P47902 AC055811.4-201ENST00000624039 1754 ntBASIC11.77□□□□□ -0.53
CDX1P47902 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
CDX1P47902 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC11.76□□□□□ -0.53
CDX1P47902 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC11.76□□□□□ -0.53
CDX1P47902 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC11.76□□□□□ -0.53
CDX1P47902 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 GSN-209ENST00000449733 2702 ntTSL 2 BASIC11.76□□□□□ -0.53
CDX1P47902 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 FUK-202ENST00000378912 3925 ntTSL 2 BASIC11.76□□□□□ -0.53
CDX1P47902 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 PRPF4-201ENST00000374198 2787 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC11.76□□□□□ -0.53
CDX1P47902 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 MPV17-205ENST00000402310 906 ntTSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 EIF3FP3-201ENST00000434851 1086 ntBASIC11.76□□□□□ -0.53
CDX1P47902 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC11.76□□□□□ -0.53
CDX1P47902 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC11.76□□□□□ -0.53
CDX1P47902 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
CDX1P47902 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC11.76□□□□□ -0.53
CDX1P47902 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC11.76□□□□□ -0.53
CDX1P47902 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 TECR-220ENST00000600083 1204 ntTSL 2 BASIC11.76□□□□□ -0.53
CDX1P47902 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC11.76□□□□□ -0.53
CDX1P47902 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 SFTPA1-202ENST00000419470 2210 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 DIDO1-204ENST00000370368 2704 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
CDX1P47902 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC11.76□□□□□ -0.53
CDX1P47902 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC11.76□□□□□ -0.53
CDX1P47902 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
CDX1P47902 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
CDX1P47902 AC099521.2-201ENST00000619354 2036 ntBASIC11.76□□□□□ -0.53
CDX1P47902 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC11.76□□□□□ -0.53
CDX1P47902 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC11.75□□□□□ -0.53
CDX1P47902 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
CDX1P47902 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms