Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 AC092573.1-201ENST00000433054 884 ntBASIC16.68■□□□□ 0.26
HLA-DOAP06340 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 RPL35P9-201ENST00000446059 350 ntBASIC16.68■□□□□ 0.26
HLA-DOAP06340 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 RN7SL23P-201ENST00000484055 275 ntBASIC16.68■□□□□ 0.26
HLA-DOAP06340 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 AC002044.2-201ENST00000624910 970 ntBASIC16.68■□□□□ 0.26
HLA-DOAP06340 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC16.68■□□□□ 0.26
HLA-DOAP06340 PDXDC2P-206ENST00000534700 1315 ntBASIC16.68■□□□□ 0.26
HLA-DOAP06340 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HLA-DOAP06340 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 AC020910.6-201ENST00000623084 1459 ntBASIC16.67■□□□□ 0.26
HLA-DOAP06340 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 AL357563.1-201ENST00000404728 395 ntBASIC16.67■□□□□ 0.26
HLA-DOAP06340 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 RN7SL375P-201ENST00000492442 298 ntBASIC16.67■□□□□ 0.26
HLA-DOAP06340 AC084752.1-201ENST00000509766 622 ntBASIC16.67■□□□□ 0.26
HLA-DOAP06340 AC226150.1-201ENST00000544259 466 ntBASIC16.67■□□□□ 0.26
HLA-DOAP06340 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 AC138761.6-201ENST00000583997 1423 ntBASIC16.67■□□□□ 0.26
HLA-DOAP06340 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HLA-DOAP06340 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
HLA-DOAP06340 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 MSANTD2P1-201ENST00000445341 1368 ntBASIC16.66■□□□□ 0.26
HLA-DOAP06340 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DOAP06340 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DOAP06340 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 AC106881.1-201ENST00000605849 3329 ntBASIC16.66■□□□□ 0.26
HLA-DOAP06340 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DOAP06340 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DOAP06340 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DOAP06340 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
HLA-DOAP06340 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 AL355334.1-201ENST00000417713 215 ntBASIC16.66■□□□□ 0.26
HLA-DOAP06340 ACTG1P19-201ENST00000418987 1116 ntBASIC16.66■□□□□ 0.26
HLA-DOAP06340 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC16.66■□□□□ 0.26
HLA-DOAP06340 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms