Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC12.2□□□□□ -0.46
SDCBPO00560 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
SDCBPO00560 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC12.2□□□□□ -0.46
SDCBPO00560 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC12.2□□□□□ -0.46
SDCBPO00560 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC12.2□□□□□ -0.46
SDCBPO00560 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC12.2□□□□□ -0.46
SDCBPO00560 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 RNA5SP486-201ENST00000515961 83 ntBASIC12.2□□□□□ -0.46
SDCBPO00560 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
SDCBPO00560 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
SDCBPO00560 AL596325.1-201ENST00000563991 1082 ntBASIC12.2□□□□□ -0.46
SDCBPO00560 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC12.2□□□□□ -0.46
SDCBPO00560 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
SDCBPO00560 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC12.2□□□□□ -0.46
SDCBPO00560 AC008735.3-201ENST00000596646 500 ntBASIC12.2□□□□□ -0.46
SDCBPO00560 AC233724.13-201ENST00000598383 410 ntBASIC12.2□□□□□ -0.46
SDCBPO00560 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC12.2□□□□□ -0.46
SDCBPO00560 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
SDCBPO00560 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC12.2□□□□□ -0.46
SDCBPO00560 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
SDCBPO00560 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC12.2□□□□□ -0.46
SDCBPO00560 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
SDCBPO00560 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
SDCBPO00560 TNRC18P1-201ENST00000502875 3650 ntBASIC12.19□□□□□ -0.46
SDCBPO00560 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
SDCBPO00560 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
SDCBPO00560 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 AC064801.2-201ENST00000625052 1303 ntBASIC12.19□□□□□ -0.46
SDCBPO00560 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 CARS-214ENST00000529772 2637 ntTSL 2 BASIC12.19□□□□□ -0.46
SDCBPO00560 AL590440.2-201ENST00000641973 1595 ntBASIC12.19□□□□□ -0.46
SDCBPO00560 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
SDCBPO00560 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
SDCBPO00560 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
SDCBPO00560 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC12.19□□□□□ -0.46
SDCBPO00560 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
SDCBPO00560 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
SDCBPO00560 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC12.19□□□□□ -0.46
SDCBPO00560 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
SDCBPO00560 MPV17-205ENST00000402310 906 ntTSL 5 BASIC12.19□□□□□ -0.46
SDCBPO00560 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC12.19□□□□□ -0.46
SDCBPO00560 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC12.19□□□□□ -0.46
SDCBPO00560 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 FAM8A4P-201ENST00000435433 1213 ntBASIC12.19□□□□□ -0.46
SDCBPO00560 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC12.19□□□□□ -0.46
SDCBPO00560 AL590640.2-201ENST00000457038 527 ntBASIC12.19□□□□□ -0.46
SDCBPO00560 LHX6-205ENST00000464484 666 ntTSL 2 BASIC12.19□□□□□ -0.46
SDCBPO00560 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC12.19□□□□□ -0.46
SDCBPO00560 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC12.19□□□□□ -0.46
SDCBPO00560 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC12.19□□□□□ -0.46
SDCBPO00560 AC132938.2-201ENST00000579188 680 ntBASIC12.19□□□□□ -0.46
SDCBPO00560 GNRHR2-203ENST00000581100 1187 ntBASIC12.19□□□□□ -0.46
SDCBPO00560 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 OR10B1P-201ENST00000601666 907 ntBASIC12.19□□□□□ -0.46
SDCBPO00560 AL591163.1-201ENST00000641757 987 ntBASIC12.19□□□□□ -0.46
SDCBPO00560 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
SDCBPO00560 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC12.19□□□□□ -0.46
SDCBPO00560 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC12.19□□□□□ -0.46
SDCBPO00560 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
SDCBPO00560 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
SDCBPO00560 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC12.19□□□□□ -0.46
SDCBPO00560 REXO1L1P-201ENST00000379010 6598 ntBASIC12.19□□□□□ -0.46
SDCBPO00560 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC12.19□□□□□ -0.46
SDCBPO00560 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
SDCBPO00560 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC12.19□□□□□ -0.46
SDCBPO00560 AP000593.2-201ENST00000542775 1433 ntBASIC12.19□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms