Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A2P12110 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 AGAP12P-201ENST00000585227 2359 ntBASIC14.14□□□□□ -0.15
COL6A2P12110 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 AL512384.1-201ENST00000406683 331 ntBASIC14.14□□□□□ -0.15
COL6A2P12110 KRT43P-201ENST00000434019 910 ntBASIC14.14□□□□□ -0.15
COL6A2P12110 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.14□□□□□ -0.15
COL6A2P12110 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A2P12110 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A2P12110 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
COL6A2P12110 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC14.14□□□□□ -0.15
COL6A2P12110 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL6A2P12110 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A2P12110 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A2P12110 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A2P12110 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 PHB-210ENST00000511832 1509 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A2P12110 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL6A2P12110 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A2P12110 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A2P12110 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A2P12110 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
COL6A2P12110 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.13□□□□□ -0.15
COL6A2P12110 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
COL6A2P12110 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.13□□□□□ -0.15
COL6A2P12110 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC14.13□□□□□ -0.15
COL6A2P12110 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.13□□□□□ -0.15
COL6A2P12110 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
COL6A2P12110 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
COL6A2P12110 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.13□□□□□ -0.15
COL6A2P12110 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.13□□□□□ -0.15
COL6A2P12110 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
COL6A2P12110 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC14.13□□□□□ -0.15
COL6A2P12110 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.13□□□□□ -0.15
COL6A2P12110 AC012441.2-201ENST00000444843 739 ntBASIC14.13□□□□□ -0.15
COL6A2P12110 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC14.13□□□□□ -0.15
COL6A2P12110 AP000812.2-201ENST00000538934 718 ntBASIC14.13□□□□□ -0.15
COL6A2P12110 AC003686.1-201ENST00000550956 1034 ntBASIC14.13□□□□□ -0.15
COL6A2P12110 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.13□□□□□ -0.15
COL6A2P12110 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC14.13□□□□□ -0.15
COL6A2P12110 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC14.13□□□□□ -0.15
COL6A2P12110 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC14.13□□□□□ -0.15
COL6A2P12110 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.13□□□□□ -0.15
COL6A2P12110 Z98259.2-201ENST00000641583 609 ntBASIC14.13□□□□□ -0.15
COL6A2P12110 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
COL6A2P12110 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
COL6A2P12110 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
COL6A2P12110 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC14.13□□□□□ -0.15
COL6A2P12110 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.13□□□□□ -0.15
COL6A2P12110 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 AL355102.3-201ENST00000554299 1678 ntBASIC14.13□□□□□ -0.15
COL6A2P12110 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
COL6A2P12110 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC14.13□□□□□ -0.15
COL6A2P12110 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC14.13□□□□□ -0.15
COL6A2P12110 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL6A2P12110 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms