Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
HOXA3O43365 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC11.52□□□□□ -0.57
HOXA3O43365 AC092580.1-201ENST00000433998 658 ntBASIC11.52□□□□□ -0.57
HOXA3O43365 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC11.52□□□□□ -0.57
HOXA3O43365 AC018463.1-201ENST00000456674 917 ntBASIC11.52□□□□□ -0.57
HOXA3O43365 BUD31-205ENST00000456893 512 ntTSL 5 BASIC11.52□□□□□ -0.57
HOXA3O43365 RPL18AP3-201ENST00000462885 528 ntBASIC11.52□□□□□ -0.57
HOXA3O43365 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC11.52□□□□□ -0.57
HOXA3O43365 ORAOV1P1-201ENST00000503108 395 ntBASIC11.52□□□□□ -0.57
HOXA3O43365 ALG1L13P-202ENST00000519320 584 ntBASIC11.52□□□□□ -0.57
HOXA3O43365 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 AP003398.1-201ENST00000531124 318 ntBASIC11.52□□□□□ -0.57
HOXA3O43365 POLD4-208ENST00000532830 904 ntTSL 3 BASIC11.52□□□□□ -0.57
HOXA3O43365 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC11.52□□□□□ -0.57
HOXA3O43365 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC11.52□□□□□ -0.57
HOXA3O43365 AC138701.2-201ENST00000553634 226 ntBASIC11.52□□□□□ -0.57
HOXA3O43365 AC005586.2-201ENST00000563946 837 ntBASIC11.52□□□□□ -0.57
HOXA3O43365 MT3-203ENST00000565838 421 ntTSL 3 BASIC11.52□□□□□ -0.57
HOXA3O43365 NUDT4P2-201ENST00000578341 546 ntBASIC11.52□□□□□ -0.57
HOXA3O43365 MIR4649-201ENST00000582839 64 ntBASIC11.52□□□□□ -0.57
HOXA3O43365 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC11.52□□□□□ -0.57
HOXA3O43365 AC107464.3-201ENST00000609172 737 ntBASIC11.52□□□□□ -0.57
HOXA3O43365 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
HOXA3O43365 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
HOXA3O43365 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC11.52□□□□□ -0.57
HOXA3O43365 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC11.52□□□□□ -0.57
HOXA3O43365 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
HOXA3O43365 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
HOXA3O43365 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
HOXA3O43365 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HOXA3O43365 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
HOXA3O43365 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
HOXA3O43365 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
HOXA3O43365 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC11.51□□□□□ -0.57
HOXA3O43365 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
HOXA3O43365 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXA3O43365 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXA3O43365 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
HOXA3O43365 MX1-218ENST00000619682 1980 ntTSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 JTB-202ENST00000356648 1040 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXA3O43365 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXA3O43365 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC11.51□□□□□ -0.57
HOXA3O43365 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC11.51□□□□□ -0.57
HOXA3O43365 MRPL22P1-201ENST00000505398 616 ntBASIC11.51□□□□□ -0.57
HOXA3O43365 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC11.51□□□□□ -0.57
HOXA3O43365 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXA3O43365 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC11.51□□□□□ -0.57
HOXA3O43365 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXA3O43365 MIR3180-2-201ENST00000581748 88 ntBASIC11.51□□□□□ -0.57
HOXA3O43365 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
HOXA3O43365 AC090386.2-201ENST00000623010 1039 ntBASIC11.51□□□□□ -0.57
HOXA3O43365 AC009084.3-201ENST00000623356 437 ntBASIC11.51□□□□□ -0.57
HOXA3O43365 AC073911.3-201ENST00000624401 631 ntBASIC11.51□□□□□ -0.57
HOXA3O43365 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC11.51□□□□□ -0.57
HOXA3O43365 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXA3O43365 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms