Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.51■□□□□ 0.23
COL4A5P29400 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COL4A5P29400 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC16.51■□□□□ 0.23
COL4A5P29400 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC16.51■□□□□ 0.23
COL4A5P29400 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC16.51■□□□□ 0.23
COL4A5P29400 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC16.51■□□□□ 0.23
COL4A5P29400 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC16.51■□□□□ 0.23
COL4A5P29400 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC16.51■□□□□ 0.23
COL4A5P29400 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC16.51■□□□□ 0.23
COL4A5P29400 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC16.51■□□□□ 0.23
COL4A5P29400 PCTP-206ENST00000573500 919 ntTSL 3 BASIC16.51■□□□□ 0.23
COL4A5P29400 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
COL4A5P29400 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.51■□□□□ 0.23
COL4A5P29400 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
COL4A5P29400 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
COL4A5P29400 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COL4A5P29400 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.51■□□□□ 0.23
COL4A5P29400 GOLGA8EP-201ENST00000530246 1959 ntBASIC16.51■□□□□ 0.23
COL4A5P29400 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COL4A5P29400 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL4A5P29400 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.5■□□□□ 0.23
COL4A5P29400 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A5P29400 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
COL4A5P29400 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
COL4A5P29400 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 POP5-201ENST00000341039 913 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A5P29400 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC16.5■□□□□ 0.23
COL4A5P29400 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC16.5■□□□□ 0.23
COL4A5P29400 AL161727.1-201ENST00000457409 530 ntBASIC16.5■□□□□ 0.23
COL4A5P29400 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC16.5■□□□□ 0.23
COL4A5P29400 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC16.5■□□□□ 0.23
COL4A5P29400 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL4A5P29400 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC16.5■□□□□ 0.23
COL4A5P29400 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC16.5■□□□□ 0.23
COL4A5P29400 RN7SL300P-201ENST00000582522 318 ntBASIC16.5■□□□□ 0.23
COL4A5P29400 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC16.5■□□□□ 0.23
COL4A5P29400 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 AC020910.6-201ENST00000623084 1459 ntBASIC16.5■□□□□ 0.23
COL4A5P29400 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A5P29400 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL4A5P29400 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A5P29400 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A5P29400 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.5■□□□□ 0.23
COL4A5P29400 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.5■□□□□ 0.23
COL4A5P29400 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 CICP24-201ENST00000605464 2705 ntBASIC16.5■□□□□ 0.23
COL4A5P29400 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
COL4A5P29400 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
COL4A5P29400 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.5■□□□□ 0.23
COL4A5P29400 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 FAM157C-201ENST00000563357 1806 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A5P29400 AC040160.2-201ENST00000623816 1675 ntBASIC16.5■□□□□ 0.23
COL4A5P29400 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 SDCBP2P1-201ENST00000416115 614 ntBASIC16.5■□□□□ 0.23
COL4A5P29400 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
COL4A5P29400 RBM14-205ENST00000443702 732 ntTSL 3 BASIC16.5■□□□□ 0.23
COL4A5P29400 AC053503.3-201ENST00000448375 114 ntBASIC16.5■□□□□ 0.23
COL4A5P29400 MTHFD2P7-201ENST00000483867 983 ntBASIC16.5■□□□□ 0.23
COL4A5P29400 AC103724.2-201ENST00000520355 476 ntBASIC16.5■□□□□ 0.23
COL4A5P29400 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC16.5■□□□□ 0.23
COL4A5P29400 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL4A5P29400 AC084262.1-201ENST00000567818 751 ntBASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms