Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 TMEM63B-201ENST00000259746 3318 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 PAPLN-203ENST00000554301 4090 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC11.1□□□□□ -0.63
CXCL1P09341 ENOX2-204ENST00000394363 4174 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 GGTA1P-202ENST00000481534 3429 ntTSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 GUCY2EP-203ENST00000531117 1918 ntBASIC11.1□□□□□ -0.63
CXCL1P09341 TMEM30A-203ENST00000475111 2791 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 CCDC186-201ENST00000369285 2035 ntTSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 CIZ1-205ENST00000372948 2858 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
CXCL1P09341 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 UBA3-201ENST00000349511 2112 ntAPPRIS ALT1 TSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
CXCL1P09341 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 IMP4-203ENST00000409935 958 ntTSL 5 BASIC11.1□□□□□ -0.63
CXCL1P09341 GPS2P2-201ENST00000430745 888 ntBASIC11.1□□□□□ -0.63
CXCL1P09341 RBPMS2P1-201ENST00000437762 623 ntBASIC11.1□□□□□ -0.63
CXCL1P09341 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC11.1□□□□□ -0.63
CXCL1P09341 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC11.1□□□□□ -0.63
CXCL1P09341 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC11.1□□□□□ -0.63
CXCL1P09341 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC11.1□□□□□ -0.63
CXCL1P09341 KRT126P-201ENST00000549467 1181 ntBASIC11.1□□□□□ -0.63
CXCL1P09341 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC11.1□□□□□ -0.63
CXCL1P09341 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC11.1□□□□□ -0.63
CXCL1P09341 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC11.1□□□□□ -0.63
CXCL1P09341 AC004461.2-201ENST00000629517 803 ntBASIC11.1□□□□□ -0.63
CXCL1P09341 HFE2-206ENST00000634927 506 ntTSL 4 BASIC11.1□□□□□ -0.63
CXCL1P09341 AF228730.6-201ENST00000641497 218 ntBASIC11.1□□□□□ -0.63
CXCL1P09341 AC084121.3-201ENST00000641716 218 ntBASIC11.1□□□□□ -0.63
CXCL1P09341 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC11.1□□□□□ -0.63
CXCL1P09341 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 ALDH4A1-202ENST00000375341 3363 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 F2RL3-201ENST00000248076 3473 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
CXCL1P09341 TRAPPC2L-211ENST00000565504 3102 ntTSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 PRAMEF25-201ENST00000614839 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 PRAMEF26-201ENST00000624207 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 MARCH10-209ENST00000583600 3214 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 MTMR2-201ENST00000346299 4681 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 MTMR2-203ENST00000393223 4681 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 TPO-204ENST00000382198 2283 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 ZBTB7B-203ENST00000417934 4017 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
CXCL1P09341 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 LGR5-202ENST00000536515 2664 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 POLL-203ENST00000370162 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 PIK3AP1-201ENST00000339364 4803 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
CXCL1P09341 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
CXCL1P09341 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 PRICKLE1-203ENST00000455697 4277 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 CES1-201ENST00000360526 2006 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 APBB1-223ENST00000618005 2107 ntTSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 PRAME-201ENST00000398741 2202 ntAPPRIS P2 TSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 CTAGE10P-201ENST00000318353 2408 ntBASIC11.09□□□□□ -0.63
CXCL1P09341 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 AL358933.1-201ENST00000565046 2830 ntBASIC11.09□□□□□ -0.63
CXCL1P09341 AL645608.3-201ENST00000448179 3043 ntTSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 JAM3-201ENST00000299106 3912 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 MED15-201ENST00000263205 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 GRAMD1B-215ENST00000638086 2665 ntTSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 NTM-206ENST00000427481 2583 ntTSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 SLC22A6-202ENST00000377871 2151 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 USB1-207ENST00000563149 1751 ntTSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 PKIG-203ENST00000372887 769 ntTSL 3 BASIC11.09□□□□□ -0.63
CXCL1P09341 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
CXCL1P09341 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
CXCL1P09341 RPL30-202ENST00000396070 440 ntTSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC11.09□□□□□ -0.63
CXCL1P09341 FAM58DP-201ENST00000428076 619 ntBASIC11.09□□□□□ -0.63
CXCL1P09341 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC11.09□□□□□ -0.63
CXCL1P09341 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CXCL1P09341 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms