Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDGFBP01127 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC14.11□□□□□ -0.15
PDGFBP01127 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
PDGFBP01127 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.11□□□□□ -0.15
PDGFBP01127 RPL10-203ENST00000406022 748 ntTSL 3 BASIC14.11□□□□□ -0.15
PDGFBP01127 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDGFBP01127 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC14.11□□□□□ -0.15
PDGFBP01127 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDGFBP01127 RPL18AP15-201ENST00000430258 517 ntBASIC14.11□□□□□ -0.15
PDGFBP01127 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC14.11□□□□□ -0.15
PDGFBP01127 SAP18P2-201ENST00000434334 459 ntBASIC14.11□□□□□ -0.15
PDGFBP01127 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC14.11□□□□□ -0.15
PDGFBP01127 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.11□□□□□ -0.15
PDGFBP01127 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
PDGFBP01127 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC14.11□□□□□ -0.15
PDGFBP01127 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC14.11□□□□□ -0.15
PDGFBP01127 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC14.11□□□□□ -0.15
PDGFBP01127 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC14.11□□□□□ -0.15
PDGFBP01127 AC010202.1-201ENST00000551181 405 ntBASIC14.11□□□□□ -0.15
PDGFBP01127 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC14.11□□□□□ -0.15
PDGFBP01127 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC14.11□□□□□ -0.15
PDGFBP01127 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
PDGFBP01127 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDGFBP01127 AC123912.6-201ENST00000612657 315 ntBASIC14.11□□□□□ -0.15
PDGFBP01127 AC106782.5-201ENST00000616011 337 ntBASIC14.11□□□□□ -0.15
PDGFBP01127 BX322562.1-201ENST00000617004 561 ntBASIC14.11□□□□□ -0.15
PDGFBP01127 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC14.11□□□□□ -0.15
PDGFBP01127 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC14.11□□□□□ -0.15
PDGFBP01127 AC126755.1-201ENST00000525846 6405 ntBASIC14.11□□□□□ -0.15
PDGFBP01127 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDGFBP01127 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
PDGFBP01127 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
PDGFBP01127 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.11□□□□□ -0.15
PDGFBP01127 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC14.11□□□□□ -0.15
PDGFBP01127 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDGFBP01127 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDGFBP01127 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDGFBP01127 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDGFBP01127 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
PDGFBP01127 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDGFBP01127 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC14.1□□□□□ -0.15
PDGFBP01127 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC14.1□□□□□ -0.15
PDGFBP01127 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.1□□□□□ -0.15
PDGFBP01127 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.1□□□□□ -0.15
PDGFBP01127 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC14.1□□□□□ -0.15
PDGFBP01127 AC092115.1-201ENST00000566277 1402 ntBASIC14.1□□□□□ -0.15
PDGFBP01127 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.1□□□□□ -0.15
PDGFBP01127 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 AC015909.5-201ENST00000624336 2266 ntBASIC14.1□□□□□ -0.15
PDGFBP01127 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
PDGFBP01127 Z98885.3-201ENST00000624882 1757 ntBASIC14.1□□□□□ -0.15
PDGFBP01127 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
PDGFBP01127 RNA5SP491-201ENST00000362936 118 ntBASIC14.1□□□□□ -0.15
PDGFBP01127 U3.5-201ENST00000363448 216 ntBASIC14.1□□□□□ -0.15
PDGFBP01127 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 CDKN2A-AS1-201ENST00000441769 823 ntBASIC14.1□□□□□ -0.15
PDGFBP01127 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC14.1□□□□□ -0.15
PDGFBP01127 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC14.1□□□□□ -0.15
PDGFBP01127 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 GYG1-209ENST00000483267 801 ntTSL 2 BASIC14.1□□□□□ -0.15
PDGFBP01127 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC14.1□□□□□ -0.15
PDGFBP01127 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC14.1□□□□□ -0.15
PDGFBP01127 AC112250.1-201ENST00000504640 745 ntBASIC14.1□□□□□ -0.15
PDGFBP01127 AC022447.5-201ENST00000504817 392 ntBASIC14.1□□□□□ -0.15
PDGFBP01127 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC14.1□□□□□ -0.15
PDGFBP01127 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC14.1□□□□□ -0.15
PDGFBP01127 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC14.1□□□□□ -0.15
PDGFBP01127 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC14.1□□□□□ -0.15
PDGFBP01127 NAT9-219ENST00000582524 573 ntTSL 4 BASIC14.1□□□□□ -0.15
PDGFBP01127 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC14.1□□□□□ -0.15
PDGFBP01127 EMP3-204ENST00000596315 761 ntTSL 2 BASIC14.1□□□□□ -0.15
PDGFBP01127 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC14.1□□□□□ -0.15
PDGFBP01127 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC14.1□□□□□ -0.15
PDGFBP01127 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
PDGFBP01127 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
PDGFBP01127 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.1□□□□□ -0.15
PDGFBP01127 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC14.1□□□□□ -0.15
PDGFBP01127 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.1□□□□□ -0.15
PDGFBP01127 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
PDGFBP01127 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
PDGFBP01127 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDGFBP01127 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms